Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
CCDC144BQ3MJ40 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
CCDC144BQ3MJ40 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
CCDC144BQ3MJ40 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC22.8■■□□□ 1.24
CCDC144BQ3MJ40 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC22.8■■□□□ 1.24
CCDC144BQ3MJ40 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC22.8■■□□□ 1.24
CCDC144BQ3MJ40 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
CCDC144BQ3MJ40 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
CCDC144BQ3MJ40 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC22.79■■□□□ 1.24
CCDC144BQ3MJ40 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC22.79■■□□□ 1.24
CCDC144BQ3MJ40 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC22.79■■□□□ 1.24
CCDC144BQ3MJ40 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
CCDC144BQ3MJ40 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
CCDC144BQ3MJ40 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
CCDC144BQ3MJ40 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
CCDC144BQ3MJ40 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
CCDC144BQ3MJ40 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC22.79■■□□□ 1.24
CCDC144BQ3MJ40 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
CCDC144BQ3MJ40 Six3os1_6.1-201ENST00000620790 196 ntBASIC22.79■■□□□ 1.24
CCDC144BQ3MJ40 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC22.79■■□□□ 1.24
CCDC144BQ3MJ40 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
CCDC144BQ3MJ40 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
CCDC144BQ3MJ40 SMG8-203ENST00000578922 2178 ntBASIC22.79■■□□□ 1.24
CCDC144BQ3MJ40 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC22.79■■□□□ 1.24
CCDC144BQ3MJ40 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC22.79■■□□□ 1.24
CCDC144BQ3MJ40 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC22.78■■□□□ 1.24
CCDC144BQ3MJ40 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
CCDC144BQ3MJ40 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
CCDC144BQ3MJ40 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC22.78■■□□□ 1.24
CCDC144BQ3MJ40 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
CCDC144BQ3MJ40 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
CCDC144BQ3MJ40 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC22.78■■□□□ 1.24
CCDC144BQ3MJ40 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
CCDC144BQ3MJ40 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
CCDC144BQ3MJ40 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
CCDC144BQ3MJ40 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC22.78■■□□□ 1.24
CCDC144BQ3MJ40 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC22.78■■□□□ 1.24
CCDC144BQ3MJ40 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC22.78■■□□□ 1.24
CCDC144BQ3MJ40 AC023632.3-201ENST00000521633 145 ntBASIC22.78■■□□□ 1.24
CCDC144BQ3MJ40 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC22.78■■□□□ 1.24
CCDC144BQ3MJ40 AC010331.1-201ENST00000611423 582 ntBASIC22.78■■□□□ 1.24
CCDC144BQ3MJ40 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC22.78■■□□□ 1.24
CCDC144BQ3MJ40 AL121829.2-201ENST00000620908 328 ntBASIC22.78■■□□□ 1.24
CCDC144BQ3MJ40 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC22.78■■□□□ 1.24
CCDC144BQ3MJ40 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
CCDC144BQ3MJ40 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC22.78■■□□□ 1.24
CCDC144BQ3MJ40 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC22.78■■□□□ 1.24
CCDC144BQ3MJ40 AC124283.5-201ENST00000624661 1809 ntBASIC22.78■■□□□ 1.24
CCDC144BQ3MJ40 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
CCDC144BQ3MJ40 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
CCDC144BQ3MJ40 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
CCDC144BQ3MJ40 STAC-204ENST00000457375 1366 ntTSL 2 BASIC22.77■■□□□ 1.24
CCDC144BQ3MJ40 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
CCDC144BQ3MJ40 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
CCDC144BQ3MJ40 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
CCDC144BQ3MJ40 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
CCDC144BQ3MJ40 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC22.77■■□□□ 1.24
CCDC144BQ3MJ40 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC22.77■■□□□ 1.24
CCDC144BQ3MJ40 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC22.77■■□□□ 1.24
CCDC144BQ3MJ40 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
CCDC144BQ3MJ40 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
CCDC144BQ3MJ40 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
CCDC144BQ3MJ40 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
CCDC144BQ3MJ40 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
CCDC144BQ3MJ40 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
CCDC144BQ3MJ40 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC22.77■■□□□ 1.24
CCDC144BQ3MJ40 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
CCDC144BQ3MJ40 MCC-208ENST00000514701 2855 ntTSL 2 BASIC22.77■■□□□ 1.24
CCDC144BQ3MJ40 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC22.77■■□□□ 1.24
CCDC144BQ3MJ40 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.23
CCDC144BQ3MJ40 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC22.77■■□□□ 1.23
CCDC144BQ3MJ40 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC22.76■■□□□ 1.23
CCDC144BQ3MJ40 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC22.76■■□□□ 1.23
CCDC144BQ3MJ40 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC22.76■■□□□ 1.23
CCDC144BQ3MJ40 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC22.76■■□□□ 1.23
CCDC144BQ3MJ40 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC22.76■■□□□ 1.23
CCDC144BQ3MJ40 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
CCDC144BQ3MJ40 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC22.76■■□□□ 1.23
CCDC144BQ3MJ40 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
CCDC144BQ3MJ40 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC22.76■■□□□ 1.23
CCDC144BQ3MJ40 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC22.76■■□□□ 1.23
CCDC144BQ3MJ40 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
CCDC144BQ3MJ40 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC22.76■■□□□ 1.23
CCDC144BQ3MJ40 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC22.76■■□□□ 1.23
CCDC144BQ3MJ40 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC22.76■■□□□ 1.23
CCDC144BQ3MJ40 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC22.76■■□□□ 1.23
CCDC144BQ3MJ40 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
CCDC144BQ3MJ40 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC22.76■■□□□ 1.23
CCDC144BQ3MJ40 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC22.76■■□□□ 1.23
CCDC144BQ3MJ40 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC22.76■■□□□ 1.23
CCDC144BQ3MJ40 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC22.76■■□□□ 1.23
CCDC144BQ3MJ40 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC22.76■■□□□ 1.23
CCDC144BQ3MJ40 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC22.76■■□□□ 1.23
CCDC144BQ3MJ40 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC22.76■■□□□ 1.23
CCDC144BQ3MJ40 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC22.76■■□□□ 1.23
CCDC144BQ3MJ40 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC22.76■■□□□ 1.23
CCDC144BQ3MJ40 AC116562.4-201ENST00000641316 2276 ntBASIC22.75■■□□□ 1.23
CCDC144BQ3MJ40 KRT8P36-201ENST00000489121 1440 ntBASIC22.75■■□□□ 1.23
CCDC144BQ3MJ40 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC22.75■■□□□ 1.23
CCDC144BQ3MJ40 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms