Protein–RNA interactions for Protein: P62312

LSM6, U6 snRNA-associated Sm-like protein LSm6, humanhuman

Known RBP Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6P62312 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LSM6P62312 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC17.25■□□□□ 0.35
LSM6P62312 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
LSM6P62312 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LSM6P62312 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
LSM6P62312 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LSM6P62312 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
LSM6P62312 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
LSM6P62312 AC116562.4-201ENST00000641316 2276 ntBASIC17.24■□□□□ 0.35
LSM6P62312 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
LSM6P62312 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
LSM6P62312 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LSM6P62312 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
LSM6P62312 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
LSM6P62312 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
LSM6P62312 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
LSM6P62312 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LSM6P62312 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LSM6P62312 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LSM6P62312 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
LSM6P62312 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
LSM6P62312 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC17.24■□□□□ 0.35
LSM6P62312 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC17.24■□□□□ 0.35
LSM6P62312 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC17.24■□□□□ 0.35
LSM6P62312 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LSM6P62312 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LSM6P62312 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC17.24■□□□□ 0.35
LSM6P62312 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC17.24■□□□□ 0.35
LSM6P62312 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC17.24■□□□□ 0.35
LSM6P62312 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LSM6P62312 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC17.24■□□□□ 0.35
LSM6P62312 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LSM6P62312 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
LSM6P62312 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC17.23■□□□□ 0.35
LSM6P62312 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
LSM6P62312 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LSM6P62312 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LSM6P62312 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
LSM6P62312 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LSM6P62312 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LSM6P62312 HLA-L-209ENST00000420110 1011 ntBASIC17.23■□□□□ 0.35
LSM6P62312 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC17.23■□□□□ 0.35
LSM6P62312 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC17.23■□□□□ 0.35
LSM6P62312 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC17.23■□□□□ 0.35
LSM6P62312 INO80E-214ENST00000620599 515 ntTSL 2 BASIC17.23■□□□□ 0.35
LSM6P62312 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LSM6P62312 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC17.23■□□□□ 0.35
LSM6P62312 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LSM6P62312 AC093484.2-201ENST00000580996 2166 ntBASIC17.23■□□□□ 0.35
LSM6P62312 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LSM6P62312 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
LSM6P62312 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LSM6P62312 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
LSM6P62312 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
LSM6P62312 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
LSM6P62312 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LSM6P62312 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC17.22■□□□□ 0.35
LSM6P62312 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LSM6P62312 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
LSM6P62312 AC124283.5-201ENST00000624661 1809 ntBASIC17.22■□□□□ 0.35
LSM6P62312 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
LSM6P62312 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LSM6P62312 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
LSM6P62312 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC17.22■□□□□ 0.35
LSM6P62312 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LSM6P62312 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC17.22■□□□□ 0.35
LSM6P62312 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
LSM6P62312 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC17.22■□□□□ 0.35
LSM6P62312 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LSM6P62312 SOX15-203ENST00000570788 1093 ntBASIC17.22■□□□□ 0.35
LSM6P62312 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC17.22■□□□□ 0.35
LSM6P62312 AC008687.6-201ENST00000596318 630 ntBASIC17.22■□□□□ 0.35
LSM6P62312 AL121829.2-201ENST00000620908 328 ntBASIC17.22■□□□□ 0.35
LSM6P62312 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LSM6P62312 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
LSM6P62312 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LSM6P62312 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LSM6P62312 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
LSM6P62312 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
LSM6P62312 AC005332.7-201ENST00000614046 2005 ntBASIC17.21■□□□□ 0.35
LSM6P62312 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LSM6P62312 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
LSM6P62312 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
LSM6P62312 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC17.21■□□□□ 0.35
LSM6P62312 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC17.21■□□□□ 0.35
LSM6P62312 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LSM6P62312 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LSM6P62312 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC17.21■□□□□ 0.35
LSM6P62312 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC17.21■□□□□ 0.35
LSM6P62312 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
LSM6P62312 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC17.21■□□□□ 0.35
LSM6P62312 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LSM6P62312 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
LSM6P62312 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC17.21■□□□□ 0.35
LSM6P62312 ID1-201ENST00000376105 1233 ntBASIC17.21■□□□□ 0.35
LSM6P62312 AL355802.2-201ENST00000402069 882 ntBASIC17.21■□□□□ 0.35
LSM6P62312 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC17.21■□□□□ 0.35
LSM6P62312 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
LSM6P62312 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC17.21■□□□□ 0.35
LSM6P62312 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms