Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC21.02■□□□□ 0.95
VCPP55072 STK25-205ENST00000405883 1904 ntTSL 2 BASIC21.02■□□□□ 0.95
VCPP55072 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC21.02■□□□□ 0.95
VCPP55072 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC21.02■□□□□ 0.95
VCPP55072 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
VCPP55072 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
VCPP55072 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
VCPP55072 PGM5P4-201ENST00000421970 445 ntBASIC21.01■□□□□ 0.95
VCPP55072 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC21.01■□□□□ 0.95
VCPP55072 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC21.01■□□□□ 0.95
VCPP55072 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC21.01■□□□□ 0.95
VCPP55072 CABP2-204ENST00000636477 941 ntTSL 5 BASIC21.01■□□□□ 0.95
VCPP55072 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC21.01■□□□□ 0.95
VCPP55072 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
VCPP55072 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
VCPP55072 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
VCPP55072 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
VCPP55072 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
VCPP55072 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
VCPP55072 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
VCPP55072 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
VCPP55072 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC21■□□□□ 0.95
VCPP55072 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC21■□□□□ 0.95
VCPP55072 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
VCPP55072 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC21■□□□□ 0.95
VCPP55072 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC21■□□□□ 0.95
VCPP55072 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC21■□□□□ 0.95
VCPP55072 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC21■□□□□ 0.95
VCPP55072 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC21■□□□□ 0.95
VCPP55072 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC21■□□□□ 0.95
VCPP55072 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
VCPP55072 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC21■□□□□ 0.95
VCPP55072 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
VCPP55072 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
VCPP55072 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
VCPP55072 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
VCPP55072 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC21■□□□□ 0.95
VCPP55072 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
VCPP55072 TCF3P1-201ENST00000423021 1937 ntBASIC21■□□□□ 0.95
VCPP55072 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC21■□□□□ 0.95
VCPP55072 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC20.99■□□□□ 0.95
VCPP55072 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
VCPP55072 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
VCPP55072 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
VCPP55072 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
VCPP55072 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC20.99■□□□□ 0.95
VCPP55072 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC20.99■□□□□ 0.95
VCPP55072 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
VCPP55072 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
VCPP55072 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC20.99■□□□□ 0.95
VCPP55072 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC20.99■□□□□ 0.95
VCPP55072 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC20.99■□□□□ 0.95
VCPP55072 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
VCPP55072 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
VCPP55072 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
VCPP55072 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC20.99■□□□□ 0.95
VCPP55072 BID-204ENST00000399767 2129 ntTSL 2 BASIC20.99■□□□□ 0.95
VCPP55072 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
VCPP55072 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC20.99■□□□□ 0.95
VCPP55072 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC20.99■□□□□ 0.95
VCPP55072 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
VCPP55072 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
VCPP55072 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
VCPP55072 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
VCPP55072 SMG8-203ENST00000578922 2178 ntBASIC20.99■□□□□ 0.95
VCPP55072 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
VCPP55072 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC20.98■□□□□ 0.95
VCPP55072 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.98■□□□□ 0.95
VCPP55072 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
VCPP55072 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
VCPP55072 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
VCPP55072 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC20.98■□□□□ 0.95
VCPP55072 GRAP-204ENST00000573099 846 ntTSL 3 BASIC20.98■□□□□ 0.95
VCPP55072 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC20.98■□□□□ 0.95
VCPP55072 NTF6B-201ENST00000591913 560 ntBASIC20.98■□□□□ 0.95
VCPP55072 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
VCPP55072 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC20.98■□□□□ 0.95
VCPP55072 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
VCPP55072 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
VCPP55072 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
VCPP55072 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC20.98■□□□□ 0.95
VCPP55072 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
VCPP55072 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
VCPP55072 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
VCPP55072 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC20.97■□□□□ 0.95
VCPP55072 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
VCPP55072 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
VCPP55072 KRT8P36-201ENST00000489121 1440 ntBASIC20.97■□□□□ 0.95
VCPP55072 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
VCPP55072 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
VCPP55072 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
VCPP55072 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
VCPP55072 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC20.97■□□□□ 0.95
VCPP55072 AL355355.2-201ENST00000442321 338 ntBASIC20.97■□□□□ 0.95
VCPP55072 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
VCPP55072 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
VCPP55072 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
VCPP55072 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC20.97■□□□□ 0.95
VCPP55072 AC120498.8-201ENST00000614275 531 ntBASIC20.97■□□□□ 0.95
VCPP55072 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms