Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 AC243732.1-201ENST00000612648 864 ntBASIC16.07■□□□□ 0.16
NKX2-1P43699 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
NKX2-1P43699 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NKX2-1P43699 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC16.07■□□□□ 0.16
NKX2-1P43699 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC16.07■□□□□ 0.16
NKX2-1P43699 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NKX2-1P43699 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC16.07■□□□□ 0.16
NKX2-1P43699 AC007613.1-201ENST00000572811 2597 ntBASIC16.07■□□□□ 0.16
NKX2-1P43699 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NKX2-1P43699 AR-207ENST00000612010 3896 ntTSL 5 BASIC16.06■□□□□ 0.16
NKX2-1P43699 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
NKX2-1P43699 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
NKX2-1P43699 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
NKX2-1P43699 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC16.06■□□□□ 0.16
NKX2-1P43699 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC16.06■□□□□ 0.16
NKX2-1P43699 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NKX2-1P43699 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NKX2-1P43699 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NKX2-1P43699 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
NKX2-1P43699 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
NKX2-1P43699 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NKX2-1P43699 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
NKX2-1P43699 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NKX2-1P43699 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
NKX2-1P43699 EBPL-204ENST00000378272 766 ntTSL 3 BASIC16.06■□□□□ 0.16
NKX2-1P43699 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
NKX2-1P43699 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC16.06■□□□□ 0.16
NKX2-1P43699 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NKX2-1P43699 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC16.06■□□□□ 0.16
NKX2-1P43699 AP001330.3-201ENST00000520123 633 ntBASIC16.06■□□□□ 0.16
NKX2-1P43699 MAG-206ENST00000597035 542 ntTSL 4 BASIC16.06■□□□□ 0.16
NKX2-1P43699 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
NKX2-1P43699 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NKX2-1P43699 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC16.06■□□□□ 0.16
NKX2-1P43699 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NKX2-1P43699 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NKX2-1P43699 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC16.06■□□□□ 0.16
NKX2-1P43699 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
NKX2-1P43699 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC16.06■□□□□ 0.16
NKX2-1P43699 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC16.06■□□□□ 0.16
NKX2-1P43699 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NKX2-1P43699 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NKX2-1P43699 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
NKX2-1P43699 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC16.05■□□□□ 0.16
NKX2-1P43699 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
NKX2-1P43699 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NKX2-1P43699 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC16.05■□□□□ 0.16
NKX2-1P43699 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC16.05■□□□□ 0.16
NKX2-1P43699 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
NKX2-1P43699 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
NKX2-1P43699 AP001271.2-201ENST00000624018 1556 ntBASIC16.05■□□□□ 0.16
NKX2-1P43699 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
NKX2-1P43699 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
NKX2-1P43699 RASA4CP-201ENST00000424092 1398 ntBASIC16.05■□□□□ 0.16
NKX2-1P43699 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
NKX2-1P43699 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
NKX2-1P43699 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
NKX2-1P43699 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
NKX2-1P43699 CDV3P1-201ENST00000471403 739 ntBASIC16.05■□□□□ 0.16
NKX2-1P43699 AC091305.1-201ENST00000479476 895 ntBASIC16.05■□□□□ 0.16
NKX2-1P43699 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC16.05■□□□□ 0.16
NKX2-1P43699 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC16.05■□□□□ 0.16
NKX2-1P43699 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC16.05■□□□□ 0.16
NKX2-1P43699 FGF8-207ENST00000618991 856 ntTSL 3 BASIC16.05■□□□□ 0.16
NKX2-1P43699 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
NKX2-1P43699 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
NKX2-1P43699 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
NKX2-1P43699 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
NKX2-1P43699 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
NKX2-1P43699 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC16.05■□□□□ 0.16
NKX2-1P43699 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NKX2-1P43699 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NKX2-1P43699 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
NKX2-1P43699 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC16.05■□□□□ 0.16
NKX2-1P43699 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
NKX2-1P43699 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
NKX2-1P43699 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
NKX2-1P43699 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
NKX2-1P43699 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
NKX2-1P43699 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
NKX2-1P43699 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
NKX2-1P43699 KRT16P6-202ENST00000425692 1426 ntBASIC16.04■□□□□ 0.16
NKX2-1P43699 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
NKX2-1P43699 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC16.04■□□□□ 0.16
NKX2-1P43699 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
NKX2-1P43699 AC097381.1-201ENST00000429019 1296 ntBASIC16.04■□□□□ 0.16
NKX2-1P43699 CCDC92B-201ENST00000575506 885 ntBASIC16.04■□□□□ 0.16
NKX2-1P43699 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC16.04■□□□□ 0.16
NKX2-1P43699 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
NKX2-1P43699 AL356652.1-201ENST00000615962 565 ntBASIC16.04■□□□□ 0.16
NKX2-1P43699 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
NKX2-1P43699 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
NKX2-1P43699 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
NKX2-1P43699 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
NKX2-1P43699 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
NKX2-1P43699 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC16.04■□□□□ 0.16
NKX2-1P43699 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC16.04■□□□□ 0.16
NKX2-1P43699 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
NKX2-1P43699 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
NKX2-1P43699 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 85 ms