Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
CIITAP33076 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
CIITAP33076 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
CIITAP33076 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC22.18■■□□□ 1.14
CIITAP33076 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
CIITAP33076 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC22.18■■□□□ 1.14
CIITAP33076 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
CIITAP33076 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
CIITAP33076 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
CIITAP33076 MDFI-202ENST00000373050 809 ntTSL 2 BASIC22.18■■□□□ 1.14
CIITAP33076 REXO2-216ENST00000544196 452 ntTSL 3 BASIC22.18■■□□□ 1.14
CIITAP33076 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC22.18■■□□□ 1.14
CIITAP33076 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC22.18■■□□□ 1.14
CIITAP33076 AL049637.2-201ENST00000641778 930 ntBASIC22.18■■□□□ 1.14
CIITAP33076 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC22.18■■□□□ 1.14
CIITAP33076 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC22.18■■□□□ 1.14
CIITAP33076 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
CIITAP33076 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC22.17■■□□□ 1.14
CIITAP33076 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC22.17■■□□□ 1.14
CIITAP33076 KRT8P8-201ENST00000434750 1448 ntBASIC22.17■■□□□ 1.14
CIITAP33076 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CIITAP33076 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
CIITAP33076 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
CIITAP33076 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC22.17■■□□□ 1.14
CIITAP33076 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
CIITAP33076 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CIITAP33076 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC22.17■■□□□ 1.14
CIITAP33076 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC22.17■■□□□ 1.14
CIITAP33076 AC113410.3-201ENST00000623366 203 ntBASIC22.17■■□□□ 1.14
CIITAP33076 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC22.17■■□□□ 1.14
CIITAP33076 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
CIITAP33076 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
CIITAP33076 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
CIITAP33076 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
CIITAP33076 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
CIITAP33076 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
CIITAP33076 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC22.16■■□□□ 1.14
CIITAP33076 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC22.16■■□□□ 1.14
CIITAP33076 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC22.16■■□□□ 1.14
CIITAP33076 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC22.16■■□□□ 1.14
CIITAP33076 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
CIITAP33076 SAPCD2P4-201ENST00000424595 1171 ntBASIC22.16■■□□□ 1.14
CIITAP33076 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
CIITAP33076 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
CIITAP33076 AP001412.1-201ENST00000608405 714 ntBASIC22.16■■□□□ 1.14
CIITAP33076 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
CIITAP33076 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
CIITAP33076 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
CIITAP33076 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC22.16■■□□□ 1.14
CIITAP33076 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
CIITAP33076 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC22.15■■□□□ 1.14
CIITAP33076 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC22.15■■□□□ 1.14
CIITAP33076 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
CIITAP33076 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
CIITAP33076 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
CIITAP33076 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
CIITAP33076 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC22.15■■□□□ 1.14
CIITAP33076 NIFKP9-201ENST00000419265 221 ntBASIC22.15■■□□□ 1.14
CIITAP33076 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC22.15■■□□□ 1.14
CIITAP33076 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC22.15■■□□□ 1.14
CIITAP33076 AC073195.1-201ENST00000607241 877 ntBASIC22.15■■□□□ 1.14
CIITAP33076 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC22.15■■□□□ 1.14
CIITAP33076 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
CIITAP33076 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC22.15■■□□□ 1.14
CIITAP33076 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC22.15■■□□□ 1.14
CIITAP33076 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC22.15■■□□□ 1.14
CIITAP33076 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
CIITAP33076 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC22.14■■□□□ 1.13
CIITAP33076 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
CIITAP33076 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC22.14■■□□□ 1.13
CIITAP33076 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC22.14■■□□□ 1.13
CIITAP33076 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC22.14■■□□□ 1.13
CIITAP33076 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC22.14■■□□□ 1.13
CIITAP33076 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC22.14■■□□□ 1.13
CIITAP33076 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
CIITAP33076 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC22.14■■□□□ 1.13
CIITAP33076 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC22.14■■□□□ 1.13
CIITAP33076 RPS15-203ENST00000586096 570 ntTSL 2 BASIC22.14■■□□□ 1.13
CIITAP33076 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
CIITAP33076 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
CIITAP33076 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC22.14■■□□□ 1.13
CIITAP33076 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
CIITAP33076 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
CIITAP33076 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC22.14■■□□□ 1.13
CIITAP33076 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC22.14■■□□□ 1.13
CIITAP33076 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
CIITAP33076 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC22.13■■□□□ 1.13
CIITAP33076 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
CIITAP33076 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CIITAP33076 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CIITAP33076 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CIITAP33076 AL596275.1-201ENST00000423464 877 ntBASIC22.13■■□□□ 1.13
CIITAP33076 KSR1P1-201ENST00000446298 240 ntBASIC22.13■■□□□ 1.13
CIITAP33076 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CIITAP33076 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CIITAP33076 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
CIITAP33076 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CIITAP33076 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC22.13■■□□□ 1.13
CIITAP33076 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CIITAP33076 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC22.13■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms