Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC18.9■□□□□ 0.62
LDLRP01130 AC073648.6-201ENST00000641589 218 ntBASIC18.9■□□□□ 0.62
LDLRP01130 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
LDLRP01130 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LDLRP01130 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC18.9■□□□□ 0.62
LDLRP01130 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
LDLRP01130 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LDLRP01130 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC18.9■□□□□ 0.62
LDLRP01130 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LDLRP01130 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
LDLRP01130 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.62
LDLRP01130 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.62
LDLRP01130 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
LDLRP01130 AC093484.2-201ENST00000580996 2166 ntBASIC18.89■□□□□ 0.62
LDLRP01130 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC18.89■□□□□ 0.62
LDLRP01130 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC18.89■□□□□ 0.61
LDLRP01130 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LDLRP01130 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC18.89■□□□□ 0.61
LDLRP01130 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC18.89■□□□□ 0.61
LDLRP01130 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC18.89■□□□□ 0.61
LDLRP01130 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LDLRP01130 NAA20-201ENST00000310450 920 ntTSL 2 BASIC18.89■□□□□ 0.61
LDLRP01130 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
LDLRP01130 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC18.89■□□□□ 0.61
LDLRP01130 PEX7-202ENST00000367756 680 ntTSL 3 BASIC18.89■□□□□ 0.61
LDLRP01130 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LDLRP01130 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
LDLRP01130 UBE2SP1-201ENST00000450587 669 ntBASIC18.89■□□□□ 0.61
LDLRP01130 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC18.89■□□□□ 0.61
LDLRP01130 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
LDLRP01130 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC18.89■□□□□ 0.61
LDLRP01130 UNC93B5-201ENST00000530315 699 ntBASIC18.89■□□□□ 0.61
LDLRP01130 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC18.89■□□□□ 0.61
LDLRP01130 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC18.89■□□□□ 0.61
LDLRP01130 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC18.89■□□□□ 0.61
LDLRP01130 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
LDLRP01130 AC053503.5-201ENST00000601508 636 ntBASIC18.89■□□□□ 0.61
LDLRP01130 MIR2861-201ENST00000636310 90 ntBASIC18.89■□□□□ 0.61
LDLRP01130 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LDLRP01130 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC18.89■□□□□ 0.61
LDLRP01130 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LDLRP01130 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LDLRP01130 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
LDLRP01130 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC18.89■□□□□ 0.61
LDLRP01130 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LDLRP01130 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC18.89■□□□□ 0.61
LDLRP01130 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LDLRP01130 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
LDLRP01130 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LDLRP01130 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LDLRP01130 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LDLRP01130 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
LDLRP01130 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LDLRP01130 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LDLRP01130 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LDLRP01130 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LDLRP01130 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LDLRP01130 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC18.88■□□□□ 0.61
LDLRP01130 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
LDLRP01130 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC18.88■□□□□ 0.61
LDLRP01130 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC18.88■□□□□ 0.61
LDLRP01130 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC18.88■□□□□ 0.61
LDLRP01130 MIR1224-201ENST00000408193 85 ntBASIC18.88■□□□□ 0.61
LDLRP01130 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC18.88■□□□□ 0.61
LDLRP01130 ISCU-212ENST00000547005 795 ntTSL 3 BASIC18.88■□□□□ 0.61
LDLRP01130 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC18.88■□□□□ 0.61
LDLRP01130 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC18.88■□□□□ 0.61
LDLRP01130 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
LDLRP01130 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
LDLRP01130 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LDLRP01130 MME-217ENST00000616757 1315 ntTSL 5 BASIC18.88■□□□□ 0.61
LDLRP01130 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
LDLRP01130 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
LDLRP01130 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LDLRP01130 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LDLRP01130 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LDLRP01130 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LDLRP01130 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC18.88■□□□□ 0.61
LDLRP01130 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LDLRP01130 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LDLRP01130 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
LDLRP01130 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC18.88■□□□□ 0.61
LDLRP01130 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LDLRP01130 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LDLRP01130 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
LDLRP01130 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
LDLRP01130 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC18.87■□□□□ 0.61
LDLRP01130 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
LDLRP01130 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC18.87■□□□□ 0.61
LDLRP01130 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
LDLRP01130 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC18.87■□□□□ 0.61
LDLRP01130 AP003097.1-201ENST00000530657 1135 ntBASIC18.87■□□□□ 0.61
LDLRP01130 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC18.87■□□□□ 0.61
LDLRP01130 RHOD-202ENST00000532559 538 ntTSL 3 BASIC18.87■□□□□ 0.61
LDLRP01130 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC18.87■□□□□ 0.61
LDLRP01130 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC18.87■□□□□ 0.61
LDLRP01130 EEF1DP3-203ENST00000566025 782 ntBASIC18.87■□□□□ 0.61
LDLRP01130 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC18.87■□□□□ 0.61
LDLRP01130 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LDLRP01130 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms