Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC16.43■□□□□ 0.22
ABCA1O95477 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
ABCA1O95477 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
ABCA1O95477 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
ABCA1O95477 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC16.43■□□□□ 0.22
ABCA1O95477 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
ABCA1O95477 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
ABCA1O95477 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
ABCA1O95477 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC16.43■□□□□ 0.22
ABCA1O95477 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
ABCA1O95477 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC16.43■□□□□ 0.22
ABCA1O95477 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
ABCA1O95477 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC16.43■□□□□ 0.22
ABCA1O95477 AC092667.1-201ENST00000434301 2586 ntBASIC16.43■□□□□ 0.22
ABCA1O95477 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
ABCA1O95477 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
ABCA1O95477 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
ABCA1O95477 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
ABCA1O95477 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
ABCA1O95477 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
ABCA1O95477 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC16.43■□□□□ 0.22
ABCA1O95477 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
ABCA1O95477 AC104076.2-201ENST00000448912 469 ntBASIC16.43■□□□□ 0.22
ABCA1O95477 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC16.43■□□□□ 0.22
ABCA1O95477 METTL23-204ENST00000586752 904 ntTSL 2 BASIC16.43■□□□□ 0.22
ABCA1O95477 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
ABCA1O95477 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC16.42■□□□□ 0.22
ABCA1O95477 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ABCA1O95477 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
ABCA1O95477 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ABCA1O95477 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
ABCA1O95477 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
ABCA1O95477 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
ABCA1O95477 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
ABCA1O95477 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC16.42■□□□□ 0.22
ABCA1O95477 NAPSB-206ENST00000562112 1266 ntBASIC16.42■□□□□ 0.22
ABCA1O95477 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
ABCA1O95477 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
ABCA1O95477 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC16.42■□□□□ 0.22
ABCA1O95477 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC16.42■□□□□ 0.22
ABCA1O95477 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
ABCA1O95477 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ABCA1O95477 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
ABCA1O95477 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ABCA1O95477 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
ABCA1O95477 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC16.42■□□□□ 0.22
ABCA1O95477 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC16.42■□□□□ 0.22
ABCA1O95477 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC16.42■□□□□ 0.22
ABCA1O95477 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC16.42■□□□□ 0.22
ABCA1O95477 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
ABCA1O95477 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC16.42■□□□□ 0.22
ABCA1O95477 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
ABCA1O95477 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC16.42■□□□□ 0.22
ABCA1O95477 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC16.42■□□□□ 0.22
ABCA1O95477 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ABCA1O95477 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC16.42■□□□□ 0.22
ABCA1O95477 AC087388.1-201ENST00000571370 1112 ntBASIC16.42■□□□□ 0.22
ABCA1O95477 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC16.42■□□□□ 0.22
ABCA1O95477 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC16.42■□□□□ 0.22
ABCA1O95477 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
ABCA1O95477 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC16.41■□□□□ 0.22
ABCA1O95477 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
ABCA1O95477 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
ABCA1O95477 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
ABCA1O95477 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
ABCA1O95477 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
ABCA1O95477 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
ABCA1O95477 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC16.41■□□□□ 0.22
ABCA1O95477 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC16.41■□□□□ 0.22
ABCA1O95477 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
ABCA1O95477 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC16.41■□□□□ 0.22
ABCA1O95477 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
ABCA1O95477 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC16.41■□□□□ 0.22
ABCA1O95477 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
ABCA1O95477 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
ABCA1O95477 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC16.41■□□□□ 0.22
ABCA1O95477 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
ABCA1O95477 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
ABCA1O95477 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
ABCA1O95477 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC16.4■□□□□ 0.22
ABCA1O95477 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
ABCA1O95477 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ABCA1O95477 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC16.4■□□□□ 0.22
ABCA1O95477 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC16.4■□□□□ 0.22
ABCA1O95477 AL445675.2-201ENST00000620291 557 ntBASIC16.4■□□□□ 0.22
ABCA1O95477 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ABCA1O95477 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
ABCA1O95477 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ABCA1O95477 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ABCA1O95477 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
ABCA1O95477 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ABCA1O95477 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC16.4■□□□□ 0.22
ABCA1O95477 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC16.4■□□□□ 0.22
ABCA1O95477 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC16.4■□□□□ 0.22
ABCA1O95477 MED25-212ENST00000618715 1467 ntTSL 5 BASIC16.4■□□□□ 0.22
ABCA1O95477 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ABCA1O95477 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ABCA1O95477 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC16.4■□□□□ 0.22
ABCA1O95477 AC011506.1-201ENST00000474329 610 ntBASIC16.4■□□□□ 0.22
ABCA1O95477 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC16.4■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms