Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 ID1-201ENST00000376105 1233 ntBASIC18.8■□□□□ 0.6
SEMA3DO95025 ABHD17AP6-201ENST00000458502 1044 ntBASIC18.8■□□□□ 0.6
SEMA3DO95025 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC18.8■□□□□ 0.6
SEMA3DO95025 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC18.8■□□□□ 0.6
SEMA3DO95025 OR2A1-AS1-207ENST00000486094 819 ntBASIC18.8■□□□□ 0.6
SEMA3DO95025 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC18.8■□□□□ 0.6
SEMA3DO95025 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC18.8■□□□□ 0.6
SEMA3DO95025 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC18.8■□□□□ 0.6
SEMA3DO95025 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SEMA3DO95025 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC18.8■□□□□ 0.6
SEMA3DO95025 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC18.8■□□□□ 0.6
SEMA3DO95025 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SEMA3DO95025 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SEMA3DO95025 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC18.8■□□□□ 0.6
SEMA3DO95025 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SEMA3DO95025 TFP1-202ENST00000475455 1573 ntBASIC18.8■□□□□ 0.6
SEMA3DO95025 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SEMA3DO95025 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC18.8■□□□□ 0.6
SEMA3DO95025 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SEMA3DO95025 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC18.8■□□□□ 0.6
SEMA3DO95025 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
SEMA3DO95025 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SEMA3DO95025 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SEMA3DO95025 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC18.79■□□□□ 0.6
SEMA3DO95025 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SEMA3DO95025 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC18.79■□□□□ 0.6
SEMA3DO95025 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SEMA3DO95025 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SEMA3DO95025 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC18.79■□□□□ 0.6
SEMA3DO95025 AL355802.2-201ENST00000402069 882 ntBASIC18.79■□□□□ 0.6
SEMA3DO95025 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SEMA3DO95025 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC18.79■□□□□ 0.6
SEMA3DO95025 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SEMA3DO95025 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC18.79■□□□□ 0.6
SEMA3DO95025 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SEMA3DO95025 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SEMA3DO95025 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SEMA3DO95025 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC18.79■□□□□ 0.6
SEMA3DO95025 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC18.79■□□□□ 0.6
SEMA3DO95025 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SEMA3DO95025 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
SEMA3DO95025 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SEMA3DO95025 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SEMA3DO95025 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC18.78■□□□□ 0.6
SEMA3DO95025 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC18.78■□□□□ 0.6
SEMA3DO95025 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SEMA3DO95025 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SEMA3DO95025 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
SEMA3DO95025 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC18.78■□□□□ 0.6
SEMA3DO95025 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SEMA3DO95025 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC18.78■□□□□ 0.6
SEMA3DO95025 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SEMA3DO95025 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SEMA3DO95025 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SEMA3DO95025 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SEMA3DO95025 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC18.78■□□□□ 0.6
SEMA3DO95025 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC18.78■□□□□ 0.6
SEMA3DO95025 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC18.78■□□□□ 0.6
SEMA3DO95025 RPS2P52-201ENST00000469610 820 ntBASIC18.78■□□□□ 0.6
SEMA3DO95025 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SEMA3DO95025 AL121906.2-201ENST00000621597 723 ntBASIC18.78■□□□□ 0.6
SEMA3DO95025 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SEMA3DO95025 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC18.77■□□□□ 0.6
SEMA3DO95025 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SEMA3DO95025 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
SEMA3DO95025 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC18.77■□□□□ 0.6
SEMA3DO95025 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC18.77■□□□□ 0.6
SEMA3DO95025 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SEMA3DO95025 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SEMA3DO95025 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
SEMA3DO95025 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SEMA3DO95025 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
SEMA3DO95025 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC18.77■□□□□ 0.6
SEMA3DO95025 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC18.77■□□□□ 0.6
SEMA3DO95025 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC18.77■□□□□ 0.6
SEMA3DO95025 INO80E-214ENST00000620599 515 ntTSL 2 BASIC18.77■□□□□ 0.6
SEMA3DO95025 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC18.77■□□□□ 0.6
SEMA3DO95025 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SEMA3DO95025 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC18.77■□□□□ 0.6
SEMA3DO95025 AL158211.5-201ENST00000623583 2518 ntBASIC18.77■□□□□ 0.6
SEMA3DO95025 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SEMA3DO95025 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SEMA3DO95025 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SEMA3DO95025 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
SEMA3DO95025 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC18.77■□□□□ 0.59
SEMA3DO95025 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SEMA3DO95025 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
SEMA3DO95025 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC18.76■□□□□ 0.59
SEMA3DO95025 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC18.76■□□□□ 0.59
SEMA3DO95025 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SEMA3DO95025 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
SEMA3DO95025 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
SEMA3DO95025 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SEMA3DO95025 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
SEMA3DO95025 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
SEMA3DO95025 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SEMA3DO95025 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC18.76■□□□□ 0.59
SEMA3DO95025 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC18.76■□□□□ 0.59
SEMA3DO95025 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC18.76■□□□□ 0.59
SEMA3DO95025 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms