Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS4BO75351 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS4BO75351 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS4BO75351 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC19.2■□□□□ 0.66
VPS4BO75351 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC19.2■□□□□ 0.66
VPS4BO75351 UQCRFS1P1-201ENST00000435169 820 ntBASIC19.2■□□□□ 0.66
VPS4BO75351 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC19.2■□□□□ 0.66
VPS4BO75351 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS4BO75351 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
VPS4BO75351 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC19.2■□□□□ 0.66
VPS4BO75351 ISCU-212ENST00000547005 795 ntTSL 3 BASIC19.2■□□□□ 0.66
VPS4BO75351 MYC-209ENST00000641252 345 ntBASIC19.2■□□□□ 0.66
VPS4BO75351 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
VPS4BO75351 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
VPS4BO75351 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS4BO75351 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS4BO75351 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS4BO75351 AP000974.1-201ENST00000623909 2387 ntBASIC19.2■□□□□ 0.66
VPS4BO75351 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC19.2■□□□□ 0.66
VPS4BO75351 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
VPS4BO75351 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS4BO75351 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS4BO75351 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS4BO75351 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS4BO75351 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS4BO75351 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC19.2■□□□□ 0.66
VPS4BO75351 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS4BO75351 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS4BO75351 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
VPS4BO75351 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC19.19■□□□□ 0.66
VPS4BO75351 KRT8P20-201ENST00000423953 1409 ntBASIC19.19■□□□□ 0.66
VPS4BO75351 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
VPS4BO75351 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
VPS4BO75351 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC19.19■□□□□ 0.66
VPS4BO75351 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
VPS4BO75351 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC19.19■□□□□ 0.66
VPS4BO75351 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC19.19■□□□□ 0.66
VPS4BO75351 AC100791.3-201ENST00000617619 330 ntBASIC19.19■□□□□ 0.66
VPS4BO75351 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC19.19■□□□□ 0.66
VPS4BO75351 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC19.19■□□□□ 0.66
VPS4BO75351 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
VPS4BO75351 PWWP2AP1-201ENST00000429776 2273 ntBASIC19.19■□□□□ 0.66
VPS4BO75351 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS4BO75351 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
VPS4BO75351 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS4BO75351 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC19.19■□□□□ 0.66
VPS4BO75351 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS4BO75351 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
VPS4BO75351 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC19.19■□□□□ 0.66
VPS4BO75351 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS4BO75351 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
VPS4BO75351 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC19.18■□□□□ 0.66
VPS4BO75351 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
VPS4BO75351 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC19.18■□□□□ 0.66
VPS4BO75351 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS4BO75351 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
VPS4BO75351 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS4BO75351 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS4BO75351 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS4BO75351 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
VPS4BO75351 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS4BO75351 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS4BO75351 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
VPS4BO75351 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC19.18■□□□□ 0.66
VPS4BO75351 AC008550.1-201ENST00000511500 884 ntBASIC19.18■□□□□ 0.66
VPS4BO75351 AC091874.3-201ENST00000512672 1195 ntBASIC19.18■□□□□ 0.66
VPS4BO75351 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC19.18■□□□□ 0.66
VPS4BO75351 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
VPS4BO75351 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
VPS4BO75351 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC19.18■□□□□ 0.66
VPS4BO75351 INO80E-214ENST00000620599 515 ntTSL 2 BASIC19.18■□□□□ 0.66
VPS4BO75351 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC19.18■□□□□ 0.66
VPS4BO75351 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC19.18■□□□□ 0.66
VPS4BO75351 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS4BO75351 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS4BO75351 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC19.18■□□□□ 0.66
VPS4BO75351 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC19.18■□□□□ 0.66
VPS4BO75351 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS4BO75351 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC19.18■□□□□ 0.66
VPS4BO75351 AL020996.1-203ENST00000536896 2307 ntBASIC19.18■□□□□ 0.66
VPS4BO75351 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC19.18■□□□□ 0.66
VPS4BO75351 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC19.17■□□□□ 0.66
VPS4BO75351 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC19.17■□□□□ 0.66
VPS4BO75351 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
VPS4BO75351 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VPS4BO75351 TNXA-203ENST00000507684 2038 ntBASIC19.17■□□□□ 0.66
VPS4BO75351 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VPS4BO75351 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC19.17■□□□□ 0.66
VPS4BO75351 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS4BO75351 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VPS4BO75351 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS4BO75351 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VPS4BO75351 MCRIP2P1-201ENST00000394346 511 ntBASIC19.17■□□□□ 0.66
VPS4BO75351 SERPINH1P1-201ENST00000419794 1249 ntBASIC19.17■□□□□ 0.66
VPS4BO75351 UBE2SP1-201ENST00000450587 669 ntBASIC19.17■□□□□ 0.66
VPS4BO75351 AC026366.1-201ENST00000488803 879 ntBASIC19.17■□□□□ 0.66
VPS4BO75351 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC19.17■□□□□ 0.66
VPS4BO75351 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VPS4BO75351 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
VPS4BO75351 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms