Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
LDB3O75112 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LDB3O75112 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
LDB3O75112 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LDB3O75112 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LDB3O75112 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC18.48■□□□□ 0.55
LDB3O75112 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LDB3O75112 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
LDB3O75112 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
LDB3O75112 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LDB3O75112 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
LDB3O75112 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
LDB3O75112 TREX2-204ENST00000370212 861 ntTSL 5 BASIC18.48■□□□□ 0.55
LDB3O75112 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
LDB3O75112 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
LDB3O75112 AC239809.2-201ENST00000415381 517 ntBASIC18.48■□□□□ 0.55
LDB3O75112 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC18.48■□□□□ 0.55
LDB3O75112 LY6E-205ENST00000519611 635 ntTSL 3 BASIC18.48■□□□□ 0.55
LDB3O75112 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC18.48■□□□□ 0.55
LDB3O75112 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC18.48■□□□□ 0.55
LDB3O75112 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC18.48■□□□□ 0.55
LDB3O75112 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC18.48■□□□□ 0.55
LDB3O75112 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC18.48■□□□□ 0.55
LDB3O75112 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LDB3O75112 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
LDB3O75112 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LDB3O75112 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LDB3O75112 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC18.48■□□□□ 0.55
LDB3O75112 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
LDB3O75112 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LDB3O75112 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
LDB3O75112 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC18.48■□□□□ 0.55
LDB3O75112 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LDB3O75112 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
LDB3O75112 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
LDB3O75112 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
LDB3O75112 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
LDB3O75112 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LDB3O75112 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
LDB3O75112 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
LDB3O75112 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
LDB3O75112 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LDB3O75112 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LDB3O75112 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC18.47■□□□□ 0.55
LDB3O75112 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC18.47■□□□□ 0.55
LDB3O75112 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC18.47■□□□□ 0.55
LDB3O75112 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
LDB3O75112 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
LDB3O75112 KRASP1-201ENST00000407852 552 ntBASIC18.47■□□□□ 0.55
LDB3O75112 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC18.47■□□□□ 0.55
LDB3O75112 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC18.47■□□□□ 0.55
LDB3O75112 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC18.47■□□□□ 0.55
LDB3O75112 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC18.47■□□□□ 0.55
LDB3O75112 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC18.47■□□□□ 0.55
LDB3O75112 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LDB3O75112 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC18.47■□□□□ 0.55
LDB3O75112 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC18.47■□□□□ 0.55
LDB3O75112 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC18.47■□□□□ 0.55
LDB3O75112 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LDB3O75112 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
LDB3O75112 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC18.46■□□□□ 0.55
LDB3O75112 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
LDB3O75112 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
LDB3O75112 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
LDB3O75112 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
LDB3O75112 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC18.46■□□□□ 0.55
LDB3O75112 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC18.46■□□□□ 0.55
LDB3O75112 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.55
LDB3O75112 F2R-202ENST00000505600 442 ntTSL 2 BASIC18.46■□□□□ 0.55
LDB3O75112 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC18.46■□□□□ 0.55
LDB3O75112 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
LDB3O75112 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC18.46■□□□□ 0.55
LDB3O75112 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC18.46■□□□□ 0.55
LDB3O75112 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
LDB3O75112 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC18.46■□□□□ 0.55
LDB3O75112 GOLGA6L3-201ENST00000507199 1679 ntBASIC18.46■□□□□ 0.55
LDB3O75112 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
LDB3O75112 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC18.46■□□□□ 0.55
LDB3O75112 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
LDB3O75112 ADM-207ENST00000530439 1839 ntTSL 2 BASIC18.46■□□□□ 0.55
LDB3O75112 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
LDB3O75112 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC18.46■□□□□ 0.55
LDB3O75112 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC18.46■□□□□ 0.54
LDB3O75112 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.54
LDB3O75112 NBPF21P-201ENST00000425093 1451 ntBASIC18.46■□□□□ 0.54
LDB3O75112 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC18.46■□□□□ 0.54
LDB3O75112 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.54
LDB3O75112 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
LDB3O75112 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
LDB3O75112 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LDB3O75112 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LDB3O75112 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
LDB3O75112 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
LDB3O75112 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LDB3O75112 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LDB3O75112 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
LDB3O75112 ISG20-202ENST00000379224 540 ntTSL 3 BASIC18.45■□□□□ 0.54
LDB3O75112 SERF2-207ENST00000409614 582 ntTSL 2 BASIC18.45■□□□□ 0.54
LDB3O75112 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
LDB3O75112 AC098590.1-201ENST00000468126 897 ntBASIC18.45■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms