Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC19.21■□□□□ 0.67
SDC3O75056 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC19.21■□□□□ 0.67
SDC3O75056 AC097488.1-201ENST00000507834 756 ntBASIC19.21■□□□□ 0.67
SDC3O75056 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC19.21■□□□□ 0.67
SDC3O75056 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC19.21■□□□□ 0.67
SDC3O75056 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SDC3O75056 C2orf69P3-201ENST00000565542 1120 ntBASIC19.21■□□□□ 0.67
SDC3O75056 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
SDC3O75056 RMI2-205ENST00000576027 818 ntTSL 2 BASIC19.21■□□□□ 0.67
SDC3O75056 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
SDC3O75056 AC007375.3-201ENST00000600936 2314 ntBASIC19.21■□□□□ 0.67
SDC3O75056 AC131212.4-201ENST00000623606 975 ntBASIC19.21■□□□□ 0.67
SDC3O75056 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SDC3O75056 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SDC3O75056 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC19.21■□□□□ 0.67
SDC3O75056 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
SDC3O75056 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC19.2■□□□□ 0.66
SDC3O75056 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
SDC3O75056 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SDC3O75056 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SDC3O75056 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SDC3O75056 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SDC3O75056 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SDC3O75056 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SDC3O75056 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC19.2■□□□□ 0.66
SDC3O75056 AC073508.3-201ENST00000619697 1419 ntBASIC19.2■□□□□ 0.66
SDC3O75056 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC19.2■□□□□ 0.66
SDC3O75056 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SDC3O75056 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SDC3O75056 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SDC3O75056 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SDC3O75056 ECEL1P2-202ENST00000465689 757 ntBASIC19.2■□□□□ 0.66
SDC3O75056 FDX2-206ENST00000492239 773 ntTSL 2 BASIC19.2■□□□□ 0.66
SDC3O75056 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC19.2■□□□□ 0.66
SDC3O75056 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SDC3O75056 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SDC3O75056 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SDC3O75056 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SDC3O75056 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SDC3O75056 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SDC3O75056 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC19.2■□□□□ 0.66
SDC3O75056 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SDC3O75056 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SDC3O75056 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SDC3O75056 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC19.19■□□□□ 0.66
SDC3O75056 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SDC3O75056 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SDC3O75056 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SDC3O75056 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SDC3O75056 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SDC3O75056 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SDC3O75056 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SDC3O75056 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
SDC3O75056 LIN28AP1-201ENST00000429574 405 ntBASIC19.19■□□□□ 0.66
SDC3O75056 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC19.19■□□□□ 0.66
SDC3O75056 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC19.19■□□□□ 0.66
SDC3O75056 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SDC3O75056 SLC25A1P4-201ENST00000567977 778 ntBASIC19.19■□□□□ 0.66
SDC3O75056 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
SDC3O75056 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC19.19■□□□□ 0.66
SDC3O75056 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
SDC3O75056 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SDC3O75056 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SDC3O75056 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SDC3O75056 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC19.19■□□□□ 0.66
SDC3O75056 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SDC3O75056 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
SDC3O75056 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
SDC3O75056 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SDC3O75056 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SDC3O75056 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC19.18■□□□□ 0.66
SDC3O75056 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SDC3O75056 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SDC3O75056 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC19.18■□□□□ 0.66
SDC3O75056 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC19.18■□□□□ 0.66
SDC3O75056 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
SDC3O75056 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC19.18■□□□□ 0.66
SDC3O75056 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SDC3O75056 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SDC3O75056 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC19.18■□□□□ 0.66
SDC3O75056 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC19.18■□□□□ 0.66
SDC3O75056 ATP5G1P1-201ENST00000448724 379 ntBASIC19.18■□□□□ 0.66
SDC3O75056 AC104076.2-201ENST00000448912 469 ntBASIC19.18■□□□□ 0.66
SDC3O75056 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SDC3O75056 NME3-204ENST00000563498 920 ntTSL 2 BASIC19.18■□□□□ 0.66
SDC3O75056 DGCR10-201ENST00000609839 495 ntBASIC19.18■□□□□ 0.66
SDC3O75056 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC19.18■□□□□ 0.66
SDC3O75056 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
SDC3O75056 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
SDC3O75056 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
SDC3O75056 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SDC3O75056 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
SDC3O75056 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
SDC3O75056 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SDC3O75056 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SDC3O75056 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SDC3O75056 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SDC3O75056 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SDC3O75056 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
SDC3O75056 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms