Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SGCEO43556 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC17.33■□□□□ 0.36
SGCEO43556 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SGCEO43556 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SGCEO43556 AC092368.3-202ENST00000574180 1591 ntBASIC17.32■□□□□ 0.36
SGCEO43556 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SGCEO43556 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC17.32■□□□□ 0.36
SGCEO43556 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SGCEO43556 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SGCEO43556 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SGCEO43556 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
SGCEO43556 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
SGCEO43556 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SGCEO43556 AL355802.2-201ENST00000402069 882 ntBASIC17.32■□□□□ 0.36
SGCEO43556 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
SGCEO43556 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC17.32■□□□□ 0.36
SGCEO43556 RGMA-211ENST00000557420 989 ntTSL 3 BASIC17.32■□□□□ 0.36
SGCEO43556 AC083880.1-201ENST00000608266 535 ntBASIC17.32■□□□□ 0.36
SGCEO43556 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SGCEO43556 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SGCEO43556 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SGCEO43556 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC17.32■□□□□ 0.36
SGCEO43556 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SGCEO43556 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SGCEO43556 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
SGCEO43556 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
SGCEO43556 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SGCEO43556 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SGCEO43556 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC17.31■□□□□ 0.36
SGCEO43556 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
SGCEO43556 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
SGCEO43556 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SGCEO43556 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SGCEO43556 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SGCEO43556 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC17.31■□□□□ 0.36
SGCEO43556 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SGCEO43556 AC060766.5-201ENST00000590539 871 ntBASIC17.31■□□□□ 0.36
SGCEO43556 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
SGCEO43556 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SGCEO43556 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC17.31■□□□□ 0.36
SGCEO43556 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC17.31■□□□□ 0.36
SGCEO43556 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SGCEO43556 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
SGCEO43556 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SGCEO43556 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SGCEO43556 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
SGCEO43556 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC17.31■□□□□ 0.36
SGCEO43556 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SGCEO43556 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SGCEO43556 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SGCEO43556 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SGCEO43556 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
SGCEO43556 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SGCEO43556 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SGCEO43556 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
SGCEO43556 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
SGCEO43556 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC17.3■□□□□ 0.36
SGCEO43556 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SGCEO43556 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC17.3■□□□□ 0.36
SGCEO43556 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SGCEO43556 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SGCEO43556 ID1-201ENST00000376105 1233 ntBASIC17.3■□□□□ 0.36
SGCEO43556 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SGCEO43556 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC17.3■□□□□ 0.36
SGCEO43556 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SGCEO43556 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC17.3■□□□□ 0.36
SGCEO43556 REXO2-208ENST00000539754 791 ntTSL 2 BASIC17.3■□□□□ 0.36
SGCEO43556 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC17.3■□□□□ 0.36
SGCEO43556 AC006557.6-201ENST00000623071 864 ntBASIC17.3■□□□□ 0.36
SGCEO43556 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
SGCEO43556 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC17.3■□□□□ 0.36
SGCEO43556 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SGCEO43556 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
SGCEO43556 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC17.3■□□□□ 0.36
SGCEO43556 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SGCEO43556 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SGCEO43556 AC125437.2-201ENST00000625180 2167 ntBASIC17.29■□□□□ 0.36
SGCEO43556 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC17.29■□□□□ 0.36
SGCEO43556 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
SGCEO43556 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC17.29■□□□□ 0.36
SGCEO43556 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
SGCEO43556 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SGCEO43556 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SGCEO43556 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SGCEO43556 CALM3-202ENST00000391918 702 ntTSL 2 BASIC17.29■□□□□ 0.36
SGCEO43556 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
SGCEO43556 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC17.29■□□□□ 0.36
SGCEO43556 HES2-206ENST00000489730 730 ntTSL 2 BASIC17.29■□□□□ 0.36
SGCEO43556 PNMA6B-201ENST00000538162 1200 ntBASIC17.29■□□□□ 0.36
SGCEO43556 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC17.29■□□□□ 0.36
SGCEO43556 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC17.29■□□□□ 0.36
SGCEO43556 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
SGCEO43556 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC17.29■□□□□ 0.36
SGCEO43556 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
SGCEO43556 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC17.29■□□□□ 0.36
SGCEO43556 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SGCEO43556 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SGCEO43556 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SGCEO43556 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC17.29■□□□□ 0.36
SGCEO43556 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms