Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
PROM1O43490 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PROM1O43490 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PROM1O43490 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC18.63■□□□□ 0.57
PROM1O43490 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC18.63■□□□□ 0.57
PROM1O43490 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PROM1O43490 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PROM1O43490 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PROM1O43490 POM121L13P-201ENST00000422362 380 ntBASIC18.63■□□□□ 0.57
PROM1O43490 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC18.63■□□□□ 0.57
PROM1O43490 AP003097.1-201ENST00000530657 1135 ntBASIC18.63■□□□□ 0.57
PROM1O43490 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PROM1O43490 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC18.63■□□□□ 0.57
PROM1O43490 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC18.63■□□□□ 0.57
PROM1O43490 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
PROM1O43490 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
PROM1O43490 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
PROM1O43490 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC18.63■□□□□ 0.57
PROM1O43490 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PROM1O43490 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PROM1O43490 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
PROM1O43490 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC18.63■□□□□ 0.57
PROM1O43490 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PROM1O43490 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC18.63■□□□□ 0.57
PROM1O43490 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PROM1O43490 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
PROM1O43490 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC18.62■□□□□ 0.57
PROM1O43490 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC18.62■□□□□ 0.57
PROM1O43490 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
PROM1O43490 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PROM1O43490 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PROM1O43490 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
PROM1O43490 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
PROM1O43490 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PROM1O43490 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
PROM1O43490 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC18.62■□□□□ 0.57
PROM1O43490 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC18.62■□□□□ 0.57
PROM1O43490 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC18.62■□□□□ 0.57
PROM1O43490 AC026366.1-201ENST00000488803 879 ntBASIC18.62■□□□□ 0.57
PROM1O43490 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PROM1O43490 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC18.62■□□□□ 0.57
PROM1O43490 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PROM1O43490 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC18.62■□□□□ 0.57
PROM1O43490 AL121829.2-201ENST00000620908 328 ntBASIC18.62■□□□□ 0.57
PROM1O43490 AL121906.2-201ENST00000621597 723 ntBASIC18.62■□□□□ 0.57
PROM1O43490 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC18.62■□□□□ 0.57
PROM1O43490 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
PROM1O43490 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC18.62■□□□□ 0.57
PROM1O43490 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
PROM1O43490 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PROM1O43490 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PROM1O43490 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
PROM1O43490 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PROM1O43490 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PROM1O43490 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC18.62■□□□□ 0.57
PROM1O43490 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
PROM1O43490 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC18.61■□□□□ 0.57
PROM1O43490 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC18.61■□□□□ 0.57
PROM1O43490 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PROM1O43490 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PROM1O43490 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PROM1O43490 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC18.61■□□□□ 0.57
PROM1O43490 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PROM1O43490 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PROM1O43490 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC18.61■□□□□ 0.57
PROM1O43490 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PROM1O43490 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
PROM1O43490 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PROM1O43490 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
PROM1O43490 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC18.61■□□□□ 0.57
PROM1O43490 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PROM1O43490 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC18.61■□□□□ 0.57
PROM1O43490 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PROM1O43490 MMAB-206ENST00000540016 945 ntTSL 3 BASIC18.61■□□□□ 0.57
PROM1O43490 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC18.61■□□□□ 0.57
PROM1O43490 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
PROM1O43490 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC18.61■□□□□ 0.57
PROM1O43490 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PROM1O43490 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PROM1O43490 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
PROM1O43490 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
PROM1O43490 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
PROM1O43490 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC18.6■□□□□ 0.57
PROM1O43490 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
PROM1O43490 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PROM1O43490 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
PROM1O43490 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PROM1O43490 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC18.6■□□□□ 0.57
PROM1O43490 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PROM1O43490 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PROM1O43490 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC18.6■□□□□ 0.57
PROM1O43490 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC18.6■□□□□ 0.57
PROM1O43490 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC18.6■□□□□ 0.57
PROM1O43490 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PROM1O43490 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC18.6■□□□□ 0.57
PROM1O43490 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC18.6■□□□□ 0.57
PROM1O43490 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC18.6■□□□□ 0.57
PROM1O43490 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PROM1O43490 MIR4651-201ENST00000582622 73 ntBASIC18.6■□□□□ 0.57
PROM1O43490 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 59.5 ms