Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
HDAC3O15379 KRT18P68-201ENST00000392293 1000 ntBASIC19.09■□□□□ 0.65
HDAC3O15379 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
HDAC3O15379 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC19.09■□□□□ 0.65
HDAC3O15379 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC19.09■□□□□ 0.65
HDAC3O15379 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC19.09■□□□□ 0.65
HDAC3O15379 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
HDAC3O15379 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
HDAC3O15379 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
HDAC3O15379 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
HDAC3O15379 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HDAC3O15379 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
HDAC3O15379 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HDAC3O15379 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC19.09■□□□□ 0.65
HDAC3O15379 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HDAC3O15379 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC19.09■□□□□ 0.65
HDAC3O15379 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC19.09■□□□□ 0.65
HDAC3O15379 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC19.09■□□□□ 0.65
HDAC3O15379 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC19.09■□□□□ 0.65
HDAC3O15379 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC19.09■□□□□ 0.65
HDAC3O15379 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC19.09■□□□□ 0.65
HDAC3O15379 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC19.08■□□□□ 0.65
HDAC3O15379 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC19.08■□□□□ 0.65
HDAC3O15379 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.65
HDAC3O15379 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
HDAC3O15379 AIRN-201ENST00000601203 4374 ntBASIC19.08■□□□□ 0.65
HDAC3O15379 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC19.08■□□□□ 0.65
HDAC3O15379 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
HDAC3O15379 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
HDAC3O15379 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
HDAC3O15379 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC19.08■□□□□ 0.64
HDAC3O15379 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC19.08■□□□□ 0.64
HDAC3O15379 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.64
HDAC3O15379 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
HDAC3O15379 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC19.08■□□□□ 0.64
HDAC3O15379 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
HDAC3O15379 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
HDAC3O15379 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
HDAC3O15379 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
HDAC3O15379 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HDAC3O15379 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
HDAC3O15379 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
HDAC3O15379 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC19.07■□□□□ 0.64
HDAC3O15379 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
HDAC3O15379 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HDAC3O15379 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HDAC3O15379 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
HDAC3O15379 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
HDAC3O15379 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC19.07■□□□□ 0.64
HDAC3O15379 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
HDAC3O15379 AC023632.3-201ENST00000521633 145 ntBASIC19.07■□□□□ 0.64
HDAC3O15379 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC19.07■□□□□ 0.64
HDAC3O15379 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC19.07■□□□□ 0.64
HDAC3O15379 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HDAC3O15379 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
HDAC3O15379 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
HDAC3O15379 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HDAC3O15379 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HDAC3O15379 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
HDAC3O15379 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
HDAC3O15379 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
HDAC3O15379 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC19.07■□□□□ 0.64
HDAC3O15379 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HDAC3O15379 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
HDAC3O15379 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HDAC3O15379 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC19.06■□□□□ 0.64
HDAC3O15379 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HDAC3O15379 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HDAC3O15379 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC19.06■□□□□ 0.64
HDAC3O15379 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HDAC3O15379 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HDAC3O15379 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
HDAC3O15379 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC19.06■□□□□ 0.64
HDAC3O15379 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC19.06■□□□□ 0.64
HDAC3O15379 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
HDAC3O15379 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HDAC3O15379 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HDAC3O15379 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HDAC3O15379 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC19.06■□□□□ 0.64
HDAC3O15379 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC19.06■□□□□ 0.64
HDAC3O15379 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC19.06■□□□□ 0.64
HDAC3O15379 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC19.06■□□□□ 0.64
HDAC3O15379 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC19.06■□□□□ 0.64
HDAC3O15379 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HDAC3O15379 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HDAC3O15379 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HDAC3O15379 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
HDAC3O15379 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HDAC3O15379 AL161938.1-201ENST00000569833 2180 ntBASIC19.06■□□□□ 0.64
HDAC3O15379 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HDAC3O15379 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HDAC3O15379 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HDAC3O15379 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
HDAC3O15379 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
HDAC3O15379 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
HDAC3O15379 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
HDAC3O15379 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HDAC3O15379 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HDAC3O15379 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HDAC3O15379 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms