Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC6.5□□□□□ -1.37
BRCA1P38398 MCFD2-206ENST00000409800 3955 ntTSL 4 BASIC6.5□□□□□ -1.37
BRCA1P38398 GON4L-203ENST00000368331 7823 ntAPPRIS ALT2 TSL 1 (best) BASIC6.5□□□□□ -1.37
BRCA1P38398 MID1-205ENST00000380785 6092 ntAPPRIS P1 TSL 2 BASIC6.5□□□□□ -1.37
BRCA1P38398 BPIFC-204ENST00000534972 1809 ntTSL 5 BASIC6.5□□□□□ -1.37
BRCA1P38398 SYT4-201ENST00000255224 4110 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
BRCA1P38398 DHX40P1-201ENST00000588725 1412 ntBASIC6.5□□□□□ -1.37
BRCA1P38398 ZNF92-201ENST00000328747 3210 ntAPPRIS P3 TSL 1 (best) BASIC6.5□□□□□ -1.37
BRCA1P38398 TRAPPC13-202ENST00000399438 3221 ntAPPRIS ALT1 TSL 2 BASIC6.5□□□□□ -1.37
BRCA1P38398 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
BRCA1P38398 NBPF12-206ENST00000617844 6326 ntAPPRIS P2 TSL 5 BASIC6.5□□□□□ -1.37
BRCA1P38398 ATP1B4-203ENST00000539306 4644 ntTSL 2 BASIC6.5□□□□□ -1.37
BRCA1P38398 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
BRCA1P38398 RAB14-201ENST00000373840 4145 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
BRCA1P38398 ASB15-206ENST00000451558 4788 ntAPPRIS P1 TSL 5 BASIC6.5□□□□□ -1.37
BRCA1P38398 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC6.5□□□□□ -1.37
BRCA1P38398 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC6.5□□□□□ -1.37
BRCA1P38398 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC6.5□□□□□ -1.37
BRCA1P38398 AC090673.1-202ENST00000356215 4617 ntTSL 2 BASIC6.5□□□□□ -1.37
BRCA1P38398 TRRAP-207ENST00000628380 12644 ntAPPRIS ALT2 TSL 5 BASIC6.5□□□□□ -1.37
BRCA1P38398 SIAH3-201ENST00000400405 7057 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
BRCA1P38398 L3MBTL3-201ENST00000361794 4217 ntAPPRIS P4 TSL 5 BASIC6.49□□□□□ -1.37
BRCA1P38398 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC6.49□□□□□ -1.37
BRCA1P38398 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
BRCA1P38398 RPS4XP16-201ENST00000427198 791 ntBASIC6.49□□□□□ -1.37
BRCA1P38398 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC6.49□□□□□ -1.37
BRCA1P38398 AP000797.2-201ENST00000475768 606 ntBASIC6.49□□□□□ -1.37
BRCA1P38398 AC093824.1-201ENST00000508796 343 ntBASIC6.49□□□□□ -1.37
BRCA1P38398 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC6.49□□□□□ -1.37
BRCA1P38398 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC6.49□□□□□ -1.37
BRCA1P38398 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC6.49□□□□□ -1.37
BRCA1P38398 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
BRCA1P38398 OR52N1-202ENST00000641645 2545 ntAPPRIS P1 BASIC6.49□□□□□ -1.37
BRCA1P38398 SLC30A8-205ENST00000519688 5242 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
BRCA1P38398 CTBS-202ENST00000370630 6600 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
BRCA1P38398 CLASP2-213ENST00000480013 5972 ntTSL 5 BASIC6.49□□□□□ -1.37
BRCA1P38398 PCAT19-201ENST00000588495 3472 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
BRCA1P38398 ERBB4-202ENST00000342788 12136 ntAPPRIS P3 TSL 1 (best) BASIC6.49□□□□□ -1.37
BRCA1P38398 MIR3681HG-201ENST00000412294 2183 ntTSL 2 BASIC6.49□□□□□ -1.37
BRCA1P38398 AP3M1-201ENST00000355264 5124 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
BRCA1P38398 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC6.49□□□□□ -1.37
BRCA1P38398 NSUN4-208ENST00000498008 3867 ntTSL 2 BASIC6.49□□□□□ -1.37
BRCA1P38398 MAPK10-366ENST00000641903 2812 ntAPPRIS ALT1 BASIC6.49□□□□□ -1.37
BRCA1P38398 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC6.49□□□□□ -1.37
BRCA1P38398 RN7SKP27-201ENST00000410684 333 ntBASIC6.49□□□□□ -1.37
BRCA1P38398 GJA6P-201ENST00000415117 1042 ntBASIC6.49□□□□□ -1.37
BRCA1P38398 TMEM246-AS1-202ENST00000425734 466 ntTSL 2 BASIC6.49□□□□□ -1.37
BRCA1P38398 TMEM246-AS1-204ENST00000450109 538 ntTSL 3 BASIC6.49□□□□□ -1.37
BRCA1P38398 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
BRCA1P38398 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC6.49□□□□□ -1.37
BRCA1P38398 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC6.49□□□□□ -1.37
BRCA1P38398 RNA5SP43-201ENST00000516559 110 ntBASIC6.49□□□□□ -1.37
BRCA1P38398 OR7E128P-201ENST00000532736 1024 ntBASIC6.49□□□□□ -1.37
BRCA1P38398 AC008147.3-201ENST00000548666 354 ntBASIC6.49□□□□□ -1.37
BRCA1P38398 TEX41-238ENST00000604253 709 ntTSL 5 BASIC6.49□□□□□ -1.37
BRCA1P38398 AL034374.2-201ENST00000605281 548 ntBASIC6.49□□□□□ -1.37
BRCA1P38398 SERPINB10-204ENST00000619595 1194 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
BRCA1P38398 AL359757.1-201ENST00000623176 255 ntBASIC6.49□□□□□ -1.37
BRCA1P38398 MEIOC-202ENST00000409464 4067 ntAPPRIS ALT2 TSL 2 BASIC6.49□□□□□ -1.37
BRCA1P38398 LINC01138-208ENST00000639159 1521 ntTSL 5 BASIC6.49□□□□□ -1.37
BRCA1P38398 SLC15A2-205ENST00000489711 5673 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
BRCA1P38398 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
BRCA1P38398 RPS29-202ENST00000396020 7062 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
BRCA1P38398 AP002004.1-201ENST00000532510 3530 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
BRCA1P38398 ERBB4-205ENST00000436443 12084 ntAPPRIS ALT2 TSL 1 (best) BASIC6.49□□□□□ -1.37
BRCA1P38398 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
BRCA1P38398 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC6.49□□□□□ -1.37
BRCA1P38398 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
BRCA1P38398 NBPF20-205ENST00000622803 3689 ntTSL 5 BASIC6.48□□□□□ -1.37
BRCA1P38398 USP8-204ENST00000425032 3559 ntTSL 2 BASIC6.48□□□□□ -1.37
BRCA1P38398 BDNF-203ENST00000395978 3988 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
BRCA1P38398 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC6.48□□□□□ -1.37
BRCA1P38398 BNIP3L-202ENST00000518611 1352 ntTSL 2 BASIC6.48□□□□□ -1.37
BRCA1P38398 KMT2A-213ENST00000534358 16602 ntAPPRIS ALT2 TSL 1 (best) BASIC6.48□□□□□ -1.37
BRCA1P38398 MAP4K4-219ENST00000625522 7458 ntAPPRIS P5 TSL 5 BASIC6.48□□□□□ -1.37
BRCA1P38398 CYP2C8-201ENST00000371270 1923 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
BRCA1P38398 OSBPL9-203ENST00000428468 2893 ntAPPRIS P3 TSL 1 (best) BASIC6.48□□□□□ -1.37
BRCA1P38398 SPATA42-201ENST00000369989 535 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
BRCA1P38398 SNORA57.1-201ENST00000391227 145 ntBASIC6.48□□□□□ -1.37
BRCA1P38398 AP003170.5-201ENST00000397185 335 ntBASIC6.48□□□□□ -1.37
BRCA1P38398 HMGB3P7-201ENST00000400214 611 ntBASIC6.48□□□□□ -1.37
BRCA1P38398 CHEK2P3-201ENST00000416118 248 ntBASIC6.48□□□□□ -1.37
BRCA1P38398 ATP6V0E1P2-201ENST00000441771 245 ntBASIC6.48□□□□□ -1.37
BRCA1P38398 AC010230.1-202ENST00000506265 592 ntTSL 5 BASIC6.48□□□□□ -1.37
BRCA1P38398 RN7SKP122-201ENST00000515923 296 ntBASIC6.48□□□□□ -1.37
BRCA1P38398 AC078899.1-201ENST00000521432 1185 ntBASIC6.48□□□□□ -1.37
BRCA1P38398 ASPH-226ENST00000522919 1277 ntTSL 3 BASIC6.48□□□□□ -1.37
BRCA1P38398 LINC02185-201ENST00000575424 760 ntTSL 5 BASIC6.48□□□□□ -1.37
BRCA1P38398 HID1-AS1-201ENST00000577295 815 ntTSL 2 BASIC6.48□□□□□ -1.37
BRCA1P38398 MYLK-221ENST00000583087 678 ntTSL 4 BASIC6.48□□□□□ -1.37
BRCA1P38398 AC008770.4-201ENST00000586394 468 ntTSL 3 BASIC6.48□□□□□ -1.37
BRCA1P38398 LAMTOR5-207ENST00000602858 553 ntTSL 2 BASIC6.48□□□□□ -1.37
BRCA1P38398 LINC00254-202ENST00000633813 439 ntTSL 3 BASIC6.48□□□□□ -1.37
BRCA1P38398 SMARCA2-231ENST00000634931 939 ntTSL 5 BASIC6.48□□□□□ -1.37
BRCA1P38398 OR52H1-202ENST00000641796 1061 ntBASIC6.48□□□□□ -1.37
BRCA1P38398 IARS-202ENST00000375643 4656 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
BRCA1P38398 ARRDC3-201ENST00000265138 4188 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
BRCA1P38398 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC6.48□□□□□ -1.37
BRCA1P38398 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
BRCA1P38398 NIN-217ENST00000530997 8368 ntAPPRIS P5 TSL 5 BASIC6.48□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms