Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AP1M1-201ENST00000291439 13193 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
COL8A1P27658 TMEM169-201ENST00000295658 3342 ntAPPRIS P1 TSL 2 BASIC6.75□□□□□ -1.33
COL8A1P27658 MORF4L2-201ENST00000360458 1824 ntAPPRIS P1 TSL 2 BASIC6.75□□□□□ -1.33
COL8A1P27658 C7orf73-202ENST00000507606 2450 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
COL8A1P27658 COPS4-201ENST00000264389 1744 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
COL8A1P27658 LPAR6-202ENST00000378434 3004 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
COL8A1P27658 ZNF185-203ENST00000324823 3597 ntAPPRIS ALT2 TSL 1 (best) BASIC6.75□□□□□ -1.33
COL8A1P27658 AC079298.1-201ENST00000625026 1619 ntBASIC6.75□□□□□ -1.33
COL8A1P27658 DOCK2-211ENST00000520908 4654 ntTSL 2 BASIC6.75□□□□□ -1.33
COL8A1P27658 MID1-204ENST00000380782 3352 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
COL8A1P27658 CDY4P-201ENST00000418290 1513 ntBASIC6.75□□□□□ -1.33
COL8A1P27658 KYNUP1-201ENST00000466683 1406 ntBASIC6.75□□□□□ -1.33
COL8A1P27658 SEMA3C-203ENST00000419255 2415 ntAPPRIS P1 TSL 2 BASIC6.75□□□□□ -1.33
COL8A1P27658 CENPL-203ENST00000367710 1771 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL8A1P27658 SKA2-201ENST00000330137 2798 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL8A1P27658 SCN9A-201ENST00000303354 9786 ntAPPRIS ALT1 TSL 5 BASIC6.74□□□□□ -1.33
COL8A1P27658 NPL-203ENST00000367553 2231 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL8A1P27658 AL451064.2-201ENST00000623514 1654 ntBASIC6.74□□□□□ -1.33
COL8A1P27658 AURKA-203ENST00000371356 2112 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL8A1P27658 SOCS5P5-201ENST00000402732 1586 ntBASIC6.74□□□□□ -1.33
COL8A1P27658 NACAP1-201ENST00000419462 1555 ntTSL 2 BASIC6.74□□□□□ -1.33
COL8A1P27658 GANC-201ENST00000318010 7781 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL8A1P27658 BRCA1-208ENST00000468300 3273 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
COL8A1P27658 AC011632.1-202ENST00000518128 2810 ntTSL 2 BASIC6.74□□□□□ -1.33
COL8A1P27658 RORA-202ENST00000309157 1908 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
COL8A1P27658 BTF3L4-202ENST00000472944 2159 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
COL8A1P27658 ARHGEF7-208ENST00000426073 4921 ntAPPRIS P3 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL8A1P27658 AJ009632.1-201ENST00000433588 1376 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
COL8A1P27658 CPSF7-206ENST00000448745 1749 ntAPPRIS ALT1 TSL 5 BASIC6.74□□□□□ -1.33
COL8A1P27658 AL133464.1-201ENST00000635130 1705 ntTSL 5 BASIC6.74□□□□□ -1.33
COL8A1P27658 OR6M2P-202ENST00000641780 2063 ntBASIC6.74□□□□□ -1.33
COL8A1P27658 MR1-204ENST00000367580 7704 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL8A1P27658 SLC16A4-206ENST00000472422 2420 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
COL8A1P27658 TEX11-204ENST00000395889 3133 ntAPPRIS P3 TSL 2 BASIC6.74□□□□□ -1.33
COL8A1P27658 RNF24-203ENST00000432261 3149 ntTSL 5 BASIC6.74□□□□□ -1.33
COL8A1P27658 SELENOT-202ENST00000471696 3469 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL8A1P27658 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL8A1P27658 CRYGS-201ENST00000307944 759 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL8A1P27658 SNORA73B-201ENST00000363217 204 ntBASIC6.74□□□□□ -1.33
COL8A1P27658 RNY3P3-201ENST00000363816 102 ntBASIC6.74□□□□□ -1.33
COL8A1P27658 RN7SKP187-201ENST00000365536 330 ntBASIC6.74□□□□□ -1.33
COL8A1P27658 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL8A1P27658 RNU6-1103P-201ENST00000384150 107 ntBASIC6.74□□□□□ -1.33
COL8A1P27658 RNA5SP122-201ENST00000384457 108 ntBASIC6.74□□□□□ -1.33
COL8A1P27658 RNU6-908P-201ENST00000410160 94 ntBASIC6.74□□□□□ -1.33
COL8A1P27658 AL603650.1-201ENST00000412680 240 ntBASIC6.74□□□□□ -1.33
COL8A1P27658 EIF1P3-201ENST00000423841 334 ntBASIC6.74□□□□□ -1.33
COL8A1P27658 AC106869.1-202ENST00000441997 604 ntTSL 4 BASIC6.74□□□□□ -1.33
COL8A1P27658 MAGEC3-203ENST00000443323 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL8A1P27658 AL512380.1-202ENST00000447728 543 ntTSL 5 BASIC6.74□□□□□ -1.33
COL8A1P27658 OR2M3-201ENST00000456743 1061 ntAPPRIS P1 BASIC6.74□□□□□ -1.33
COL8A1P27658 CMAHP-203ENST00000458373 1101 ntTSL 5 BASIC6.74□□□□□ -1.33
COL8A1P27658 VN1R6P-201ENST00000458417 907 ntBASIC6.74□□□□□ -1.33
COL8A1P27658 AC010655.3-201ENST00000478818 450 ntBASIC6.74□□□□□ -1.33
COL8A1P27658 GRHL1-206ENST00000480736 572 ntTSL 4 BASIC6.74□□□□□ -1.33
COL8A1P27658 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC6.74□□□□□ -1.33
COL8A1P27658 AC103851.1-201ENST00000506833 274 ntBASIC6.74□□□□□ -1.33
COL8A1P27658 AC011396.3-201ENST00000508845 512 ntTSL 3 BASIC6.74□□□□□ -1.33
COL8A1P27658 LINC01950-202ENST00000513273 572 ntTSL 2 BASIC6.74□□□□□ -1.33
COL8A1P27658 AC010493.1-201ENST00000513479 292 ntBASIC6.74□□□□□ -1.33
COL8A1P27658 RNU7-30P-201ENST00000516835 62 ntBASIC6.74□□□□□ -1.33
COL8A1P27658 RNU6-789P-201ENST00000517105 102 ntBASIC6.74□□□□□ -1.33
COL8A1P27658 AP003354.2-201ENST00000517983 563 ntTSL 4 BASIC6.74□□□□□ -1.33
COL8A1P27658 LINC01603-202ENST00000519557 712 ntTSL 3 BASIC6.74□□□□□ -1.33
COL8A1P27658 KCTD9P4-201ENST00000526766 1166 ntBASIC6.74□□□□□ -1.33
COL8A1P27658 AC103974.1-201ENST00000527285 874 ntTSL 3 BASIC6.74□□□□□ -1.33
COL8A1P27658 HHLA3-207ENST00000531950 541 ntAPPRIS ALT2 TSL 5 BASIC6.74□□□□□ -1.33
COL8A1P27658 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC6.74□□□□□ -1.33
COL8A1P27658 FAXC-204ENST00000538471 941 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
COL8A1P27658 RERG-AS1-201ENST00000541243 337 ntTSL 2 BASIC6.74□□□□□ -1.33
COL8A1P27658 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC6.74□□□□□ -1.33
COL8A1P27658 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC6.74□□□□□ -1.33
COL8A1P27658 AC135050.4-201ENST00000568708 504 ntTSL 5 BASIC6.74□□□□□ -1.33
COL8A1P27658 AC008551.1-201ENST00000575612 405 ntTSL 5 BASIC6.74□□□□□ -1.33
COL8A1P27658 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC6.74□□□□□ -1.33
COL8A1P27658 STRADA-207ENST00000578008 1153 ntTSL 5 BASIC6.74□□□□□ -1.33
COL8A1P27658 LINC01841-201ENST00000586698 573 ntTSL 4 BASIC6.74□□□□□ -1.33
COL8A1P27658 AC009303.2-206ENST00000588042 786 ntTSL 5 BASIC6.74□□□□□ -1.33
COL8A1P27658 AC091132.1-201ENST00000588189 547 ntTSL 5 BASIC6.74□□□□□ -1.33
COL8A1P27658 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC6.74□□□□□ -1.33
COL8A1P27658 AL358335.3-201ENST00000604678 327 ntBASIC6.74□□□□□ -1.33
COL8A1P27658 AC004852.1-201ENST00000605206 154 ntBASIC6.74□□□□□ -1.33
COL8A1P27658 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC6.74□□□□□ -1.33
COL8A1P27658 AP000238.1-201ENST00000608759 426 ntBASIC6.74□□□□□ -1.33
COL8A1P27658 AC211486.5-201ENST00000616609 775 ntTSL 3 BASIC6.74□□□□□ -1.33
COL8A1P27658 RFPL4AP6-201ENST00000616792 846 ntBASIC6.74□□□□□ -1.33
COL8A1P27658 AC244100.1-201ENST00000618141 407 ntTSL 5 BASIC6.74□□□□□ -1.33
COL8A1P27658 U4.1-201ENST00000620349 87 ntBASIC6.74□□□□□ -1.33
COL8A1P27658 SLC10A7-204ENST00000502607 1638 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
COL8A1P27658 OR4F17-202ENST00000585993 2669 ntAPPRIS P1 BASIC6.74□□□□□ -1.33
COL8A1P27658 LINC02102-201ENST00000503989 3364 ntTSL 2 BASIC6.74□□□□□ -1.33
COL8A1P27658 ZNF136-201ENST00000343979 3643 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL8A1P27658 RAI14-220ENST00000512629 2941 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
COL8A1P27658 CLRN1-AS1-202ENST00000476886 2223 ntTSL 2 BASIC6.74□□□□□ -1.33
COL8A1P27658 AL355103.1-201ENST00000557246 2226 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
COL8A1P27658 SERPINA6-201ENST00000341584 1534 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL8A1P27658 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL8A1P27658 MAP3K19-205ENST00000392917 1765 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
COL8A1P27658 TXNRD1-219ENST00000529546 2018 ntTSL 2 BASIC6.74□□□□□ -1.33
COL8A1P27658 AKT3-203ENST00000366539 5127 ntAPPRIS P1 TSL 5 BASIC6.74□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 88.8 ms