Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AP004289.1-201ENST00000436307 2205 ntBASIC7.11□□□□□ -1.27
MSX1P28360 CORIN-207ENST00000505909 3018 ntTSL 5 BASIC7.11□□□□□ -1.27
MSX1P28360 AL359922.2-201ENST00000581788 3017 ntBASIC7.11□□□□□ -1.27
MSX1P28360 IFT22-201ENST00000315322 1130 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
MSX1P28360 TMSB4XP2-201ENST00000335179 210 ntBASIC7.11□□□□□ -1.27
MSX1P28360 Y_RNA.97-201ENST00000363094 102 ntBASIC7.11□□□□□ -1.27
MSX1P28360 C1orf54-203ENST00000369102 1251 ntAPPRIS P1 TSL 5 BASIC7.11□□□□□ -1.27
MSX1P28360 C9orf92-202ENST00000380685 379 ntAPPRIS ALT2 TSL 2 BASIC7.11□□□□□ -1.27
MSX1P28360 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
MSX1P28360 SNORA70G-201ENST00000383923 142 ntBASIC7.11□□□□□ -1.27
MSX1P28360 SNORA70I-201ENST00000384544 135 ntBASIC7.11□□□□□ -1.27
MSX1P28360 MIR217-201ENST00000384817 110 ntBASIC7.11□□□□□ -1.27
MSX1P28360 RNU6-1300P-201ENST00000391046 108 ntBASIC7.11□□□□□ -1.27
MSX1P28360 RPS24P12-201ENST00000402084 394 ntBASIC7.11□□□□□ -1.27
MSX1P28360 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
MSX1P28360 AL590143.1-201ENST00000405071 138 ntBASIC7.11□□□□□ -1.27
MSX1P28360 BX295541.1-201ENST00000417774 250 ntBASIC7.11□□□□□ -1.27
MSX1P28360 SNRPEP10-201ENST00000420249 274 ntBASIC7.11□□□□□ -1.27
MSX1P28360 AC064875.1-203ENST00000422996 582 ntTSL 4 BASIC7.11□□□□□ -1.27
MSX1P28360 Z93242.1-201ENST00000427102 353 ntBASIC7.11□□□□□ -1.27
MSX1P28360 AL157402.1-201ENST00000429469 363 ntTSL 3 BASIC7.11□□□□□ -1.27
MSX1P28360 AC007422.1-201ENST00000433065 1008 ntTSL 5 BASIC7.11□□□□□ -1.27
MSX1P28360 AL121759.1-201ENST00000434043 795 ntTSL 5 BASIC7.11□□□□□ -1.27
MSX1P28360 PGBD4P3-201ENST00000440731 581 ntBASIC7.11□□□□□ -1.27
MSX1P28360 RPS19P6-201ENST00000441327 433 ntBASIC7.11□□□□□ -1.27
MSX1P28360 SPRYD7P1-201ENST00000443861 570 ntBASIC7.11□□□□□ -1.27
MSX1P28360 GAPDHP17-201ENST00000449858 1001 ntBASIC7.11□□□□□ -1.27
MSX1P28360 OR52E7P-201ENST00000452394 933 ntBASIC7.11□□□□□ -1.27
MSX1P28360 RN7SL647P-201ENST00000485429 300 ntBASIC7.11□□□□□ -1.27
MSX1P28360 RN7SL37P-201ENST00000490461 307 ntBASIC7.11□□□□□ -1.27
MSX1P28360 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
MSX1P28360 AC114981.1-201ENST00000503897 678 ntBASIC7.11□□□□□ -1.27
MSX1P28360 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC7.11□□□□□ -1.27
MSX1P28360 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC7.11□□□□□ -1.27
MSX1P28360 RPL7L1P13-201ENST00000511702 739 ntBASIC7.11□□□□□ -1.27
MSX1P28360 OR10J9P-201ENST00000511932 987 ntBASIC7.11□□□□□ -1.27
MSX1P28360 IGKV3D-31-201ENST00000519131 281 ntBASIC7.11□□□□□ -1.27
MSX1P28360 AC055860.1-201ENST00000525523 688 ntTSL 5 BASIC7.11□□□□□ -1.27
MSX1P28360 TNFRSF17-201ENST00000053243 994 ntAPPRIS P2 TSL 1 (best) BASIC7.11□□□□□ -1.27
MSX1P28360 AC005833.3-202ENST00000544741 770 ntAPPRIS P1 TSL 3 BASIC7.11□□□□□ -1.27
MSX1P28360 AC037471.2-201ENST00000564941 598 ntBASIC7.11□□□□□ -1.27
MSX1P28360 MIR4685-201ENST00000578185 69 ntBASIC7.11□□□□□ -1.27
MSX1P28360 DYNLL1P1-201ENST00000595442 269 ntBASIC7.11□□□□□ -1.27
MSX1P28360 CNTNAP3P1-201ENST00000616657 906 ntBASIC7.11□□□□□ -1.27
MSX1P28360 AL122125.1-201ENST00000616999 600 ntBASIC7.11□□□□□ -1.27
MSX1P28360 AC005609.2-201ENST00000623320 592 ntBASIC7.11□□□□□ -1.27
MSX1P28360 SPRR5-201ENST00000636302 817 ntAPPRIS P1 TSL 5 BASIC7.11□□□□□ -1.27
MSX1P28360 ENSA-215ENST00000638926 360 ntTSL 5 BASIC7.11□□□□□ -1.27
MSX1P28360 FAM13A-205ENST00000503556 3386 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
MSX1P28360 SLC9A9-201ENST00000316549 3627 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
MSX1P28360 AC104958.1-201ENST00000509350 1973 ntTSL 2 BASIC7.11□□□□□ -1.27
MSX1P28360 AC008080.4-201ENST00000420185 1589 ntTSL 2 BASIC7.11□□□□□ -1.27
MSX1P28360 ZRANB3-202ENST00000401392 6820 ntAPPRIS ALT2 TSL 1 (best) BASIC7.11□□□□□ -1.27
MSX1P28360 ADGRF2-204ENST00000507065 3043 ntTSL 5 BASIC7.11□□□□□ -1.27
MSX1P28360 MAP4K4-203ENST00000347699 3792 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
MSX1P28360 SSR1-210ENST00000489567 1893 ntTSL 3 BASIC7.11□□□□□ -1.27
MSX1P28360 CDC42-201ENST00000315554 1452 ntAPPRIS P5 TSL 1 (best) BASIC7.11□□□□□ -1.27
MSX1P28360 PIWIL2-205ENST00000611073 2864 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
MSX1P28360 OR7D2-201ENST00000344248 3224 ntAPPRIS P1 BASIC7.1□□□□□ -1.27
MSX1P28360 AC020904.2-202ENST00000614660 1401 ntBASIC7.1□□□□□ -1.27
MSX1P28360 PXT1-201ENST00000454782 2108 ntAPPRIS P2 TSL 1 (best) BASIC7.1□□□□□ -1.27
MSX1P28360 BMX-201ENST00000342014 2499 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
MSX1P28360 GREM1-203ENST00000622074 14606 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
MSX1P28360 MAPK10-354ENST00000641823 2732 ntBASIC7.1□□□□□ -1.27
MSX1P28360 KIAA1958-203ENST00000536272 7650 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
MSX1P28360 ANKS1B-215ENST00000549493 3328 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
MSX1P28360 TOPORS-202ENST00000379858 3621 ntAPPRIS ALT2 TSL 1 (best) BASIC7.1□□□□□ -1.27
MSX1P28360 PDIK1L-202ENST00000374271 4279 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
MSX1P28360 UBAP2-204ENST00000379238 4289 ntAPPRIS P1 TSL 5 BASIC7.1□□□□□ -1.27
MSX1P28360 HRH1-203ENST00000431010 4278 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
MSX1P28360 NBPF15-206ENST00000581897 4272 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
MSX1P28360 PUS10-201ENST00000316752 2278 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
MSX1P28360 CCP110-202ENST00000396208 5151 ntAPPRIS P3 TSL 1 (best) BASIC7.1□□□□□ -1.27
MSX1P28360 HIST1H4F-201ENST00000244537 312 ntAPPRIS P1 BASIC7.1□□□□□ -1.27
MSX1P28360 RNU6-254P-201ENST00000363377 107 ntBASIC7.1□□□□□ -1.27
MSX1P28360 RNA5SP355-201ENST00000365317 135 ntBASIC7.1□□□□□ -1.27
MSX1P28360 S100A7-202ENST00000368723 479 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
MSX1P28360 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC7.1□□□□□ -1.27
MSX1P28360 MIR16-1-201ENST00000385271 89 ntBASIC7.1□□□□□ -1.27
MSX1P28360 Z97832.1-201ENST00000402490 328 ntBASIC7.1□□□□□ -1.27
MSX1P28360 AL049693.1-201ENST00000402760 611 ntBASIC7.1□□□□□ -1.27
MSX1P28360 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC7.1□□□□□ -1.27
MSX1P28360 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC7.1□□□□□ -1.27
MSX1P28360 AC011753.4-201ENST00000417974 311 ntBASIC7.1□□□□□ -1.27
MSX1P28360 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC7.1□□□□□ -1.27
MSX1P28360 PDCL2P1-201ENST00000419302 352 ntBASIC7.1□□□□□ -1.27
MSX1P28360 AC006017.1-201ENST00000424630 673 ntTSL 3 BASIC7.1□□□□□ -1.27
MSX1P28360 SNX19-202ENST00000426933 888 ntTSL 2 BASIC7.1□□□□□ -1.27
MSX1P28360 AC018644.1-201ENST00000429934 551 ntBASIC7.1□□□□□ -1.27
MSX1P28360 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC7.1□□□□□ -1.27
MSX1P28360 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC7.1□□□□□ -1.27
MSX1P28360 AL512882.1-201ENST00000436086 832 ntBASIC7.1□□□□□ -1.27
MSX1P28360 AL161454.1-201ENST00000446226 569 ntBASIC7.1□□□□□ -1.27
MSX1P28360 LINC01767-201ENST00000451914 545 ntTSL 2 BASIC7.1□□□□□ -1.27
MSX1P28360 AL513533.1-201ENST00000453728 415 ntBASIC7.1□□□□□ -1.27
MSX1P28360 MTCO3P20-201ENST00000454926 688 ntBASIC7.1□□□□□ -1.27
MSX1P28360 AC008080.2-201ENST00000455149 577 ntTSL 4 BASIC7.1□□□□□ -1.27
MSX1P28360 RPL10P6-201ENST00000457497 318 ntBASIC7.1□□□□□ -1.27
MSX1P28360 AC018450.1-202ENST00000465880 529 ntTSL 4 BASIC7.1□□□□□ -1.27
MSX1P28360 RN7SL791P-201ENST00000467868 295 ntBASIC7.1□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 69.4 ms