Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 A1CF-206ENST00000395489 9517 ntTSL 2 BASIC6.52□□□□□ -1.37
RNF4P78317 LINC02523-201ENST00000423208 2963 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
RNF4P78317 GOLGB1-201ENST00000340645 11187 ntAPPRIS P3 TSL 1 (best) BASIC6.52□□□□□ -1.37
RNF4P78317 AC093909.5-201ENST00000621839 1799 ntBASIC6.52□□□□□ -1.37
RNF4P78317 SRGAP1-206ENST00000543397 5652 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
RNF4P78317 FGD6-205ENST00000549499 3757 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
RNF4P78317 ADI1-202ENST00000382093 3870 ntTSL 2 BASIC6.52□□□□□ -1.37
RNF4P78317 PRUNE1-202ENST00000368934 2214 ntTSL 2 BASIC6.52□□□□□ -1.37
RNF4P78317 BX284613.1-201ENST00000452221 1641 ntBASIC6.52□□□□□ -1.37
RNF4P78317 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
RNF4P78317 OR56A4-201ENST00000330728 1209 ntBASIC6.52□□□□□ -1.37
RNF4P78317 MYL1-201ENST00000341685 870 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
RNF4P78317 RPL7-201ENST00000352983 1101 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
RNF4P78317 RNU6-543P-201ENST00000362576 108 ntBASIC6.52□□□□□ -1.37
RNF4P78317 RNU6-1283P-201ENST00000365314 105 ntBASIC6.52□□□□□ -1.37
RNF4P78317 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC6.52□□□□□ -1.37
RNF4P78317 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC6.52□□□□□ -1.37
RNF4P78317 AL590762.1-201ENST00000391782 432 ntBASIC6.52□□□□□ -1.37
RNF4P78317 AL451061.1-201ENST00000407887 862 ntBASIC6.52□□□□□ -1.37
RNF4P78317 AC013404.1-201ENST00000413068 249 ntBASIC6.52□□□□□ -1.37
RNF4P78317 AC105402.1-201ENST00000413336 545 ntBASIC6.52□□□□□ -1.37
RNF4P78317 AC105275.1-201ENST00000417794 491 ntTSL 3 BASIC6.52□□□□□ -1.37
RNF4P78317 AC007435.1-201ENST00000421086 415 ntBASIC6.52□□□□□ -1.37
RNF4P78317 OR5W1P-201ENST00000423705 938 ntBASIC6.52□□□□□ -1.37
RNF4P78317 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC6.52□□□□□ -1.37
RNF4P78317 USP9YP31-201ENST00000431405 881 ntBASIC6.52□□□□□ -1.37
RNF4P78317 SDHC-204ENST00000432287 460 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
RNF4P78317 AC010890.1-202ENST00000432414 535 ntTSL 3 BASIC6.52□□□□□ -1.37
RNF4P78317 HMGB1P45-201ENST00000435986 653 ntBASIC6.52□□□□□ -1.37
RNF4P78317 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC6.52□□□□□ -1.37
RNF4P78317 AL445307.1-201ENST00000446476 602 ntTSL 3 BASIC6.52□□□□□ -1.37
RNF4P78317 AL020997.1-201ENST00000446554 349 ntBASIC6.52□□□□□ -1.37
RNF4P78317 AC114752.1-201ENST00000448204 289 ntTSL 3 BASIC6.52□□□□□ -1.37
RNF4P78317 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC6.52□□□□□ -1.37
RNF4P78317 MIR4432HG-202ENST00000453476 703 ntTSL 3 BASIC6.52□□□□□ -1.37
RNF4P78317 ZNF114P1-201ENST00000453500 292 ntBASIC6.52□□□□□ -1.37
RNF4P78317 AL133480.2-201ENST00000456723 487 ntBASIC6.52□□□□□ -1.37
RNF4P78317 RN7SL849P-201ENST00000485236 295 ntBASIC6.52□□□□□ -1.37
RNF4P78317 RPL7P41-201ENST00000485823 957 ntBASIC6.52□□□□□ -1.37
RNF4P78317 AC104779.1-201ENST00000503557 441 ntTSL 3 BASIC6.52□□□□□ -1.37
RNF4P78317 DUXAP2-201ENST00000519198 589 ntBASIC6.52□□□□□ -1.37
RNF4P78317 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC6.52□□□□□ -1.37
RNF4P78317 SSU72P6-201ENST00000532644 488 ntBASIC6.52□□□□□ -1.37
RNF4P78317 AC009387.1-201ENST00000549163 441 ntTSL 3 BASIC6.52□□□□□ -1.37
RNF4P78317 AL135978.1-201ENST00000553618 1266 ntBASIC6.52□□□□□ -1.37
RNF4P78317 HNRNPA1P74-201ENST00000560782 835 ntBASIC6.52□□□□□ -1.37
RNF4P78317 AC027104.1-201ENST00000563702 681 ntBASIC6.52□□□□□ -1.37
RNF4P78317 AC012414.6-201ENST00000568241 401 ntBASIC6.52□□□□□ -1.37
RNF4P78317 AC019131.1-201ENST00000583654 622 ntTSL 5 BASIC6.52□□□□□ -1.37
RNF4P78317 AC090415.2-201ENST00000584078 374 ntTSL 3 BASIC6.52□□□□□ -1.37
RNF4P78317 ABBA01006766.1-201ENST00000584728 294 ntBASIC6.52□□□□□ -1.37
RNF4P78317 AC006262.2-201ENST00000599127 612 ntTSL 3 BASIC6.52□□□□□ -1.37
RNF4P78317 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC6.52□□□□□ -1.37
RNF4P78317 AC103881.1-201ENST00000603476 538 ntBASIC6.52□□□□□ -1.37
RNF4P78317 HSPE1-MOB4-201ENST00000604458 890 ntAPPRIS P1 TSL 3 BASIC6.52□□□□□ -1.37
RNF4P78317 AC126118.1-201ENST00000607744 628 ntBASIC6.52□□□□□ -1.37
RNF4P78317 AC019131.2-201ENST00000609071 870 ntBASIC6.52□□□□□ -1.37
RNF4P78317 AP005137.2-201ENST00000609238 400 ntBASIC6.52□□□□□ -1.37
RNF4P78317 AC007342.8-201ENST00000623278 678 ntBASIC6.52□□□□□ -1.37
RNF4P78317 AC008626.2-201ENST00000624425 248 ntBASIC6.52□□□□□ -1.37
RNF4P78317 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC6.52□□□□□ -1.37
RNF4P78317 CYP2C8-213ENST00000628935 924 ntTSL 5 BASIC6.52□□□□□ -1.37
RNF4P78317 AC244258.1-201ENST00000637553 1071 ntBASIC6.52□□□□□ -1.37
RNF4P78317 OR56A4-203ENST00000641279 1209 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
RNF4P78317 AC004023.1-201ENST00000561473 1744 ntBASIC6.52□□□□□ -1.37
RNF4P78317 AL603750.1-201ENST00000624216 1717 ntBASIC6.52□□□□□ -1.37
RNF4P78317 ZNF326-203ENST00000370447 9433 ntAPPRIS ALT2 TSL 1 (best) BASIC6.52□□□□□ -1.37
RNF4P78317 BRWD3-201ENST00000373275 11381 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
RNF4P78317 MAGEB16-204ENST00000399989 1818 ntAPPRIS P2 TSL 5 BASIC6.52□□□□□ -1.37
RNF4P78317 HRG-201ENST00000232003 2015 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
RNF4P78317 LINC01684-203ENST00000453784 2908 ntTSL 2 BASIC6.52□□□□□ -1.37
RNF4P78317 VTCN1-202ENST00000359008 2581 ntAPPRIS ALT2 TSL 5 BASIC6.52□□□□□ -1.37
RNF4P78317 SMAD1-202ENST00000394092 1658 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
RNF4P78317 NBPF14-209ENST00000620240 2656 ntTSL 5 BASIC6.52□□□□□ -1.37
RNF4P78317 AL359263.1-201ENST00000441188 2796 ntBASIC6.52□□□□□ -1.37
RNF4P78317 ZNF521-214ENST00000584787 4327 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
RNF4P78317 FBLN5-205ENST00000556154 1875 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
RNF4P78317 NEMP2-202ENST00000409150 6168 ntAPPRIS P1 TSL 2 BASIC6.51□□□□□ -1.37
RNF4P78317 PBLD-203ENST00000336578 2449 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
RNF4P78317 CHRM3-AS2-201ENST00000427859 2431 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
RNF4P78317 ARNT-201ENST00000354396 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC6.51□□□□□ -1.37
RNF4P78317 MARCH6-201ENST00000274140 9569 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
RNF4P78317 CLNK-204ENST00000515667 4180 ntAPPRIS ALT2 TSL 3 BASIC6.51□□□□□ -1.37
RNF4P78317 TTC6-202ENST00000382320 1972 ntTSL 2 BASIC6.51□□□□□ -1.37
RNF4P78317 AL450327.1-201ENST00000430931 2632 ntTSL 5 BASIC6.51□□□□□ -1.37
RNF4P78317 MED23-201ENST00000354577 4581 ntAPPRIS ALT1 TSL 1 (best) BASIC6.51□□□□□ -1.37
RNF4P78317 TGFBR3-202ENST00000370399 4550 ntAPPRIS ALT1 TSL 1 (best) BASIC6.51□□□□□ -1.37
RNF4P78317 QRSL1-202ENST00000369046 4106 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
RNF4P78317 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC6.51□□□□□ -1.37
RNF4P78317 CASP10-208ENST00000448480 1603 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
RNF4P78317 CSDE1-201ENST00000261443 3228 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
RNF4P78317 ZNF112-201ENST00000337401 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC6.51□□□□□ -1.37
RNF4P78317 TRIM64-201ENST00000533122 2691 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
RNF4P78317 TRAT1-201ENST00000295756 1919 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
RNF4P78317 RNA5SP172-201ENST00000365061 118 ntBASIC6.51□□□□□ -1.37
RNF4P78317 OR2M5-201ENST00000366476 939 ntAPPRIS P1 BASIC6.51□□□□□ -1.37
RNF4P78317 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC6.51□□□□□ -1.37
RNF4P78317 ATP5E-203ENST00000395663 697 ntAPPRIS P1 TSL 2 BASIC6.51□□□□□ -1.37
RNF4P78317 EEF1GP6-201ENST00000402309 905 ntBASIC6.51□□□□□ -1.37
RNF4P78317 AL359715.1-201ENST00000404330 555 ntBASIC6.51□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 73.7 ms