Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 VWA3A-202ENST00000389398 4600 ntAPPRIS P2 TSL 5 BASIC6.99□□□□□ -1.29
COL18A1P39060 HTR2C-202ENST00000371950 4652 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
COL18A1P39060 MSR1-204ENST00000381998 2826 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
COL18A1P39060 NBPF20-205ENST00000622803 3689 ntTSL 5 BASIC6.99□□□□□ -1.29
COL18A1P39060 CSDE1-203ENST00000358528 4076 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
COL18A1P39060 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC6.99□□□□□ -1.29
COL18A1P39060 MAPK10-366ENST00000641903 2812 ntAPPRIS ALT1 BASIC6.99□□□□□ -1.29
COL18A1P39060 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
COL18A1P39060 AC079741.1-201ENST00000321498 212 ntBASIC6.99□□□□□ -1.29
COL18A1P39060 RNA5SP90-201ENST00000364801 99 ntBASIC6.99□□□□□ -1.29
COL18A1P39060 AC068538.1-201ENST00000376856 336 ntBASIC6.99□□□□□ -1.29
COL18A1P39060 NUDT19P3-201ENST00000404698 555 ntBASIC6.99□□□□□ -1.29
COL18A1P39060 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC6.99□□□□□ -1.29
COL18A1P39060 LINC02210-201ENST00000444561 288 ntBASIC6.99□□□□□ -1.29
COL18A1P39060 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC6.99□□□□□ -1.29
COL18A1P39060 TPT1P13-201ENST00000449760 499 ntBASIC6.99□□□□□ -1.29
COL18A1P39060 SORCS3-AS1-201ENST00000449805 1278 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
COL18A1P39060 COX6B1P5-201ENST00000509843 249 ntBASIC6.99□□□□□ -1.29
COL18A1P39060 ARL6IP1P3-201ENST00000524544 560 ntBASIC6.99□□□□□ -1.29
COL18A1P39060 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC6.99□□□□□ -1.29
COL18A1P39060 AC008033.2-201ENST00000542626 177 ntBASIC6.99□□□□□ -1.29
COL18A1P39060 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC6.99□□□□□ -1.29
COL18A1P39060 MIR6758-201ENST00000620653 63 ntBASIC6.99□□□□□ -1.29
COL18A1P39060 EIF3E-206ENST00000519030 1324 ntTSL 5 BASIC6.99□□□□□ -1.29
COL18A1P39060 LINC01128-205ENST00000445118 6606 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
COL18A1P39060 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC6.99□□□□□ -1.29
COL18A1P39060 AL161756.1-201ENST00000555861 1751 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
COL18A1P39060 ZNF320-205ENST00000595635 6448 ntAPPRIS P1 TSL 2 BASIC6.98□□□□□ -1.29
COL18A1P39060 TSC1-208ENST00000545250 8310 ntTSL 5 BASIC6.98□□□□□ -1.29
COL18A1P39060 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC6.98□□□□□ -1.29
COL18A1P39060 MECOM-209ENST00000472280 3593 ntTSL 5 BASIC6.98□□□□□ -1.29
COL18A1P39060 DTNA-225ENST00000595022 6016 ntAPPRIS ALT2 TSL 1 (best) BASIC6.98□□□□□ -1.29
COL18A1P39060 RIC3-202ENST00000335425 5223 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
COL18A1P39060 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC6.98□□□□□ -1.29
COL18A1P39060 DIO2-201ENST00000422005 6272 ntTSL 5 BASIC6.98□□□□□ -1.29
COL18A1P39060 RNU6-398P-201ENST00000384143 109 ntBASIC6.98□□□□□ -1.29
COL18A1P39060 GAPDHP15-201ENST00000398586 975 ntBASIC6.98□□□□□ -1.29
COL18A1P39060 AL356967.1-201ENST00000406305 431 ntBASIC6.98□□□□□ -1.29
COL18A1P39060 PRR21-201ENST00000408934 1170 ntAPPRIS P1 BASIC6.98□□□□□ -1.29
COL18A1P39060 TMEM246-AS1-202ENST00000425734 466 ntTSL 2 BASIC6.98□□□□□ -1.29
COL18A1P39060 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC6.98□□□□□ -1.29
COL18A1P39060 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC6.98□□□□□ -1.29
COL18A1P39060 RN7SL205P-201ENST00000490174 284 ntBASIC6.98□□□□□ -1.29
COL18A1P39060 F11-AS1-201ENST00000505103 1178 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
COL18A1P39060 RAB9BP1-201ENST00000519581 626 ntBASIC6.98□□□□□ -1.29
COL18A1P39060 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC6.98□□□□□ -1.29
COL18A1P39060 ETFRF1-211ENST00000557540 1259 ntAPPRIS ALT1 TSL 2 BASIC6.98□□□□□ -1.29
COL18A1P39060 NPM1P42-201ENST00000560329 862 ntBASIC6.98□□□□□ -1.29
COL18A1P39060 AC046158.2-201ENST00000568764 707 ntTSL 3 BASIC6.98□□□□□ -1.29
COL18A1P39060 RN7SL52P-201ENST00000584271 284 ntBASIC6.98□□□□□ -1.29
COL18A1P39060 RN7SL722P-201ENST00000617780 284 ntBASIC6.98□□□□□ -1.29
COL18A1P39060 RN7SL565P-201ENST00000618246 284 ntBASIC6.98□□□□□ -1.29
COL18A1P39060 CCNT1-201ENST00000261900 6973 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
COL18A1P39060 ATP5A1P1-201ENST00000454088 1321 ntBASIC6.98□□□□□ -1.29
COL18A1P39060 NLRP3P1-201ENST00000622303 1785 ntBASIC6.98□□□□□ -1.29
COL18A1P39060 BRD7P6-201ENST00000431406 1860 ntBASIC6.98□□□□□ -1.29
COL18A1P39060 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
COL18A1P39060 SF3B3-201ENST00000302516 9720 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
COL18A1P39060 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
COL18A1P39060 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
COL18A1P39060 AC063976.2-201ENST00000425667 3556 ntBASIC6.98□□□□□ -1.29
COL18A1P39060 KALRN-202ENST00000291478 10888 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
COL18A1P39060 WDCP-201ENST00000295148 3817 ntAPPRIS P3 TSL 2 BASIC6.97□□□□□ -1.29
COL18A1P39060 AC098820.3-201ENST00000414135 976 ntTSL 3 BASIC6.97□□□□□ -1.29
COL18A1P39060 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC6.97□□□□□ -1.29
COL18A1P39060 OXSM-202ENST00000420173 1256 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
COL18A1P39060 NDUFAF4P3-201ENST00000456468 525 ntBASIC6.97□□□□□ -1.29
COL18A1P39060 AC140172.1-201ENST00000502928 141 ntBASIC6.97□□□□□ -1.29
COL18A1P39060 AC010245.1-201ENST00000511329 754 ntTSL 3 BASIC6.97□□□□□ -1.29
COL18A1P39060 OR5AN2P-201ENST00000534535 896 ntBASIC6.97□□□□□ -1.29
COL18A1P39060 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC6.97□□□□□ -1.29
COL18A1P39060 AC060780.2-201ENST00000589047 198 ntBASIC6.97□□□□□ -1.29
COL18A1P39060 MIR6780A-201ENST00000615089 68 ntBASIC6.97□□□□□ -1.29
COL18A1P39060 AP003400.3-201ENST00000624904 346 ntBASIC6.97□□□□□ -1.29
COL18A1P39060 ARHGEF6-201ENST00000250617 6019 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
COL18A1P39060 ZNF160-202ENST00000418871 4219 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
COL18A1P39060 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
COL18A1P39060 ONECUT2-202ENST00000491143 16121 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
COL18A1P39060 IL1RAP-202ENST00000317757 5413 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
COL18A1P39060 PAX6-270ENST00000640368 6975 ntAPPRIS P4 TSL 5 BASIC6.97□□□□□ -1.29
COL18A1P39060 ARHGAP32-203ENST00000524655 8194 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
COL18A1P39060 ERCC6L-202ENST00000373657 4344 ntAPPRIS ALT2 TSL 2 BASIC6.97□□□□□ -1.29
COL18A1P39060 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
COL18A1P39060 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
COL18A1P39060 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
COL18A1P39060 CORIN-201ENST00000273857 4852 ntAPPRIS P2 TSL 1 (best) BASIC6.97□□□□□ -1.29
COL18A1P39060 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
COL18A1P39060 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC6.97□□□□□ -1.29
COL18A1P39060 OR2J2-203ENST00000641417 2392 ntAPPRIS P1 BASIC6.97□□□□□ -1.29
COL18A1P39060 OR5AN1-201ENST00000313940 1037 ntAPPRIS P1 BASIC6.97□□□□□ -1.29
COL18A1P39060 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
COL18A1P39060 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC6.97□□□□□ -1.29
COL18A1P39060 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC6.97□□□□□ -1.29
COL18A1P39060 LINC01781-202ENST00000443104 591 ntTSL 2 BASIC6.97□□□□□ -1.29
COL18A1P39060 AC112498.1-201ENST00000444401 332 ntBASIC6.97□□□□□ -1.29
COL18A1P39060 RBMY2TP-201ENST00000451162 947 ntBASIC6.97□□□□□ -1.29
COL18A1P39060 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC6.97□□□□□ -1.29
COL18A1P39060 C1GALT1P3-201ENST00000522049 819 ntBASIC6.97□□□□□ -1.29
COL18A1P39060 OR7E128P-201ENST00000532736 1024 ntBASIC6.97□□□□□ -1.29
COL18A1P39060 RN7SL690P-201ENST00000582087 240 ntBASIC6.97□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 86.7 ms