Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 CDH12P3-201ENST00000517935 295 ntBASIC7.21□□□□□ -1.26
HOXC9P31274 WDYHV1-203ENST00000518125 880 ntTSL 2 BASIC7.21□□□□□ -1.26
HOXC9P31274 CDH12P1-201ENST00000518435 295 ntBASIC7.21□□□□□ -1.26
HOXC9P31274 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC7.21□□□□□ -1.26
HOXC9P31274 AC144548.2-201ENST00000550231 946 ntTSL 3 BASIC7.21□□□□□ -1.26
HOXC9P31274 AL445528.2-201ENST00000620582 470 ntBASIC7.21□□□□□ -1.26
HOXC9P31274 AP001784.1-201ENST00000624107 428 ntBASIC7.21□□□□□ -1.26
HOXC9P31274 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC7.21□□□□□ -1.26
HOXC9P31274 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.26
HOXC9P31274 MSR1-204ENST00000381998 2826 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
HOXC9P31274 CASP8-203ENST00000323492 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC7.21□□□□□ -1.26
HOXC9P31274 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC7.21□□□□□ -1.26
HOXC9P31274 UGT2B24P-201ENST00000514441 1597 ntBASIC7.2□□□□□ -1.26
HOXC9P31274 TRAPPC13-202ENST00000399438 3221 ntAPPRIS ALT1 TSL 2 BASIC7.2□□□□□ -1.26
HOXC9P31274 PTPRB-210ENST00000551525 5291 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
HOXC9P31274 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC7.2□□□□□ -1.26
HOXC9P31274 LINC00704-201ENST00000430998 1478 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
HOXC9P31274 PCDH15-213ENST00000395445 5917 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
HOXC9P31274 PSG11-201ENST00000306322 990 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
HOXC9P31274 LINC00342-201ENST00000412393 654 ntTSL 3 BASIC7.2□□□□□ -1.26
HOXC9P31274 AC068535.1-201ENST00000416008 471 ntTSL 3 BASIC7.2□□□□□ -1.26
HOXC9P31274 RIMKLBP2-201ENST00000424737 654 ntBASIC7.2□□□□□ -1.26
HOXC9P31274 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC7.2□□□□□ -1.26
HOXC9P31274 AC104634.1-201ENST00000452720 462 ntBASIC7.2□□□□□ -1.26
HOXC9P31274 HIGD1AP8-201ENST00000453927 274 ntBASIC7.2□□□□□ -1.26
HOXC9P31274 DNAJB5P1-201ENST00000454004 806 ntBASIC7.2□□□□□ -1.26
HOXC9P31274 AC009127.1-201ENST00000467090 155 ntBASIC7.2□□□□□ -1.26
HOXC9P31274 VN1R5-201ENST00000472952 1239 ntAPPRIS P1 BASIC7.2□□□□□ -1.26
HOXC9P31274 BLNK-209ENST00000495266 440 ntTSL 5 BASIC7.2□□□□□ -1.26
HOXC9P31274 LINC02492-201ENST00000502952 564 ntTSL 5 BASIC7.2□□□□□ -1.26
HOXC9P31274 AC024940.3-201ENST00000538551 316 ntBASIC7.2□□□□□ -1.26
HOXC9P31274 YWHABP2-201ENST00000540201 713 ntBASIC7.2□□□□□ -1.26
HOXC9P31274 AC078814.2-201ENST00000552996 535 ntTSL 4 BASIC7.2□□□□□ -1.26
HOXC9P31274 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC7.2□□□□□ -1.26
HOXC9P31274 NPM1P42-201ENST00000560329 862 ntBASIC7.2□□□□□ -1.26
HOXC9P31274 AL390726.5-202ENST00000564800 256 ntBASIC7.2□□□□□ -1.26
HOXC9P31274 AC011840.5-201ENST00000582125 771 ntBASIC7.2□□□□□ -1.26
HOXC9P31274 AC092683.1-203ENST00000594050 654 ntTSL 5 BASIC7.2□□□□□ -1.26
HOXC9P31274 ELSPBP1-205ENST00000597519 557 ntTSL 3 BASIC7.2□□□□□ -1.26
HOXC9P31274 AC009237.13-201ENST00000603193 276 ntBASIC7.2□□□□□ -1.26
HOXC9P31274 AC009950.2-201ENST00000636548 183 ntBASIC7.2□□□□□ -1.26
HOXC9P31274 OR2T7-201ENST00000641057 3463 ntAPPRIS P1 BASIC7.2□□□□□ -1.26
HOXC9P31274 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC7.2□□□□□ -1.26
HOXC9P31274 PRRC2C-202ENST00000367742 10366 ntAPPRIS ALT2 TSL 5 BASIC7.2□□□□□ -1.26
HOXC9P31274 ZC3H11A-202ENST00000367210 5877 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
HOXC9P31274 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
HOXC9P31274 GPAM-202ENST00000369425 5664 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
HOXC9P31274 AMZ2-206ENST00000577985 2257 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
HOXC9P31274 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
HOXC9P31274 RNF14-204ENST00000394519 4173 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
HOXC9P31274 AC134980.1-209ENST00000639059 2317 ntTSL 2 BASIC7.19□□□□□ -1.26
HOXC9P31274 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC7.19□□□□□ -1.26
HOXC9P31274 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC7.19□□□□□ -1.26
HOXC9P31274 BDNF-211ENST00000439476 4532 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
HOXC9P31274 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC7.19□□□□□ -1.26
HOXC9P31274 DCX-207ENST00000635795 9163 ntAPPRIS P4 TSL 1 (best) BASIC7.19□□□□□ -1.26
HOXC9P31274 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC7.19□□□□□ -1.26
HOXC9P31274 CTBS-202ENST00000370630 6600 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
HOXC9P31274 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC7.19□□□□□ -1.26
HOXC9P31274 AC006600.2-201ENST00000624834 2506 ntBASIC7.19□□□□□ -1.26
HOXC9P31274 TGFBR1-208ENST00000550253 1538 ntTSL 2 BASIC7.19□□□□□ -1.26
HOXC9P31274 RN7SKP104-201ENST00000362605 328 ntBASIC7.19□□□□□ -1.26
HOXC9P31274 RNU1-146P-201ENST00000364015 165 ntBASIC7.19□□□□□ -1.26
HOXC9P31274 DBIP1-201ENST00000401435 260 ntBASIC7.19□□□□□ -1.26
HOXC9P31274 RN7SKP126-201ENST00000411143 300 ntBASIC7.19□□□□□ -1.26
HOXC9P31274 RPS26P38-201ENST00000414476 348 ntBASIC7.19□□□□□ -1.26
HOXC9P31274 AC092651.1-201ENST00000426110 312 ntBASIC7.19□□□□□ -1.26
HOXC9P31274 DPH5-204ENST00000427040 609 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
HOXC9P31274 RPL7P56-201ENST00000429441 717 ntBASIC7.19□□□□□ -1.26
HOXC9P31274 KRT8P51-201ENST00000438938 274 ntBASIC7.19□□□□□ -1.26
HOXC9P31274 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC7.19□□□□□ -1.26
HOXC9P31274 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC7.19□□□□□ -1.26
HOXC9P31274 RPS11P7-201ENST00000442125 465 ntBASIC7.19□□□□□ -1.26
HOXC9P31274 Z92846.1-201ENST00000456203 268 ntBASIC7.19□□□□□ -1.26
HOXC9P31274 AC011287.2-201ENST00000456809 842 ntTSL 5 BASIC7.19□□□□□ -1.26
HOXC9P31274 ZNF346-IT1-201ENST00000515264 745 ntTSL 3 BASIC7.19□□□□□ -1.26
HOXC9P31274 AP001804.1-201ENST00000526868 919 ntBASIC7.19□□□□□ -1.26
HOXC9P31274 OR5AZ1P-201ENST00000527448 943 ntBASIC7.19□□□□□ -1.26
HOXC9P31274 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC7.19□□□□□ -1.26
HOXC9P31274 LDHC-203ENST00000535809 757 ntTSL 5 BASIC7.19□□□□□ -1.26
HOXC9P31274 LDHC-205ENST00000537486 583 ntTSL 5 BASIC7.19□□□□□ -1.26
HOXC9P31274 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC7.19□□□□□ -1.26
HOXC9P31274 AC011447.4-201ENST00000587562 111 ntBASIC7.19□□□□□ -1.26
HOXC9P31274 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC7.19□□□□□ -1.26
HOXC9P31274 CASC19-281ENST00000642118 1554 ntBASIC7.19□□□□□ -1.26
HOXC9P31274 RGPD2-203ENST00000638730 5306 ntAPPRIS ALT2 TSL 5 BASIC7.19□□□□□ -1.26
HOXC9P31274 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC7.19□□□□□ -1.26
HOXC9P31274 BRCA1-210ENST00000471181 5936 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
HOXC9P31274 TTC39B-207ENST00000507993 1950 ntAPPRIS ALT2 TSL 2 BASIC7.19□□□□□ -1.26
HOXC9P31274 LUC7L2-201ENST00000263545 2287 ntTSL 5 BASIC7.18□□□□□ -1.26
HOXC9P31274 ANKS1B-216ENST00000549558 2268 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
HOXC9P31274 MYO6-202ENST00000369977 5597 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
HOXC9P31274 NDUFS1-201ENST00000233190 11819 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
HOXC9P31274 PLEKHA1-201ENST00000368988 3872 ntTSL 5 BASIC7.18□□□□□ -1.26
HOXC9P31274 RIPK1-202ENST00000380409 3864 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
HOXC9P31274 CASC19-243ENST00000641588 1546 ntBASIC7.18□□□□□ -1.26
HOXC9P31274 AC006206.1-201ENST00000544842 3387 ntBASIC7.18□□□□□ -1.26
HOXC9P31274 TTC3-201ENST00000354749 9084 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
HOXC9P31274 COMMD6-204ENST00000377619 594 ntTSL 2 BASIC7.18□□□□□ -1.26
HOXC9P31274 IFNA17-201ENST00000413767 980 ntAPPRIS P1 BASIC7.18□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 81.8 ms