Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AL513314.2-202ENST00000617077 536 ntTSL 5 BASIC4.88□□□□□ -1.63
USF1P22415 AL391425.1-202ENST00000617518 774 ntTSL 5 BASIC4.88□□□□□ -1.63
USF1P22415 AL513314.2-201ENST00000621440 545 ntTSL 5 BASIC4.88□□□□□ -1.63
USF1P22415 AL137789.1-204ENST00000623503 666 ntTSL 5 BASIC4.88□□□□□ -1.63
USF1P22415 AC021766.1-201ENST00000624404 741 ntBASIC4.88□□□□□ -1.63
USF1P22415 CCT5-215ENST00000625723 135 ntTSL 5 BASIC4.88□□□□□ -1.63
USF1P22415 TNFSF4-201ENST00000281834 3470 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
USF1P22415 GRIK1-201ENST00000327783 3179 ntTSL 5 BASIC4.88□□□□□ -1.63
USF1P22415 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
USF1P22415 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC4.88□□□□□ -1.63
USF1P22415 TOPORSLP1-201ENST00000467693 2102 ntBASIC4.88□□□□□ -1.63
USF1P22415 AC116158.1-201ENST00000560231 2129 ntBASIC4.88□□□□□ -1.63
USF1P22415 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
USF1P22415 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
USF1P22415 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC4.88□□□□□ -1.63
USF1P22415 NAT1-201ENST00000307719 1815 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
USF1P22415 AL023755.1-201ENST00000441851 1801 ntTSL 2 BASIC4.88□□□□□ -1.63
USF1P22415 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
USF1P22415 MTCO1P46-201ENST00000451639 1491 ntBASIC4.88□□□□□ -1.63
USF1P22415 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
USF1P22415 AP005435.3-201ENST00000531260 3198 ntBASIC4.88□□□□□ -1.63
USF1P22415 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
USF1P22415 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
USF1P22415 MIR4435-2HG-207ENST00000439362 1522 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
USF1P22415 FAM205BP-203ENST00000455647 3752 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
USF1P22415 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC4.87□□□□□ -1.63
USF1P22415 KCNMA1-AS1-202ENST00000429850 3566 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
USF1P22415 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
USF1P22415 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
USF1P22415 PINCR-201ENST00000440955 2228 ntTSL 2 BASIC4.87□□□□□ -1.63
USF1P22415 TAAR1-201ENST00000275216 1020 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
USF1P22415 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC4.87□□□□□ -1.63
USF1P22415 SNORA74A-201ENST00000364089 198 ntBASIC4.87□□□□□ -1.63
USF1P22415 RNA5SP211-201ENST00000365516 117 ntBASIC4.87□□□□□ -1.63
USF1P22415 GCSAML-201ENST00000366488 3820 ntAPPRIS P3 TSL 1 (best) BASIC4.87□□□□□ -1.63
USF1P22415 AL391422.1-201ENST00000402155 436 ntBASIC4.87□□□□□ -1.63
USF1P22415 LINC01829-201ENST00000414404 571 ntTSL 2 BASIC4.87□□□□□ -1.63
USF1P22415 OR6E1P-201ENST00000414424 923 ntBASIC4.87□□□□□ -1.63
USF1P22415 AL354868.1-201ENST00000417077 482 ntBASIC4.87□□□□□ -1.63
USF1P22415 GNRH1-202ENST00000421054 470 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
USF1P22415 AL603840.1-203ENST00000424357 645 ntTSL 3 BASIC4.87□□□□□ -1.63
USF1P22415 FRMPD4-AS1-201ENST00000425057 285 ntTSL 3 BASIC4.87□□□□□ -1.63
USF1P22415 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC4.87□□□□□ -1.63
USF1P22415 AL162408.1-201ENST00000428853 433 ntTSL 5 BASIC4.87□□□□□ -1.63
USF1P22415 SLC36A1-202ENST00000429484 977 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
USF1P22415 TMEM196-204ENST00000433641 768 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
USF1P22415 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC4.87□□□□□ -1.63
USF1P22415 RPS23P6-201ENST00000466136 431 ntBASIC4.87□□□□□ -1.63
USF1P22415 AC090602.1-201ENST00000469695 252 ntBASIC4.87□□□□□ -1.63
USF1P22415 LINC01365-202ENST00000512219 637 ntTSL 5 BASIC4.87□□□□□ -1.63
USF1P22415 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC4.87□□□□□ -1.63
USF1P22415 SCARNA6.1-201ENST00000516989 238 ntBASIC4.87□□□□□ -1.63
USF1P22415 AC100802.1-201ENST00000519197 1026 ntTSL 3 BASIC4.87□□□□□ -1.63
USF1P22415 LINC01947-201ENST00000523742 566 ntTSL 4 BASIC4.87□□□□□ -1.63
USF1P22415 AC016257.1-201ENST00000550088 641 ntTSL 2 BASIC4.87□□□□□ -1.63
USF1P22415 AC006504.5-212ENST00000587188 746 ntTSL 3 BASIC4.87□□□□□ -1.63
USF1P22415 AC011451.1-201ENST00000591336 405 ntTSL 3 BASIC4.87□□□□□ -1.63
USF1P22415 AC010487.1-201ENST00000594408 1172 ntBASIC4.87□□□□□ -1.63
USF1P22415 UBA52-209ENST00000597451 514 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
USF1P22415 AC120349.1-201ENST00000599498 282 ntTSL 5 BASIC4.87□□□□□ -1.63
USF1P22415 ZNF418-210ENST00000600989 597 ntTSL 5 BASIC4.87□□□□□ -1.63
USF1P22415 AC008536.1-201ENST00000602872 669 ntBASIC4.87□□□□□ -1.63
USF1P22415 AC135983.2-201ENST00000604301 628 ntTSL 5 BASIC4.87□□□□□ -1.63
USF1P22415 AC092944.2-201ENST00000605443 889 ntBASIC4.87□□□□□ -1.63
USF1P22415 Metazoa_SRP.207-201ENST00000612254 285 ntBASIC4.87□□□□□ -1.63
USF1P22415 TADA2A-212ENST00000620367 1043 ntTSL 5 BASIC4.87□□□□□ -1.63
USF1P22415 MIR6719-201ENST00000622428 87 ntBASIC4.87□□□□□ -1.63
USF1P22415 AL390318.1-201ENST00000624564 687 ntBASIC4.87□□□□□ -1.63
USF1P22415 SLC39A12-201ENST00000377369 2808 ntAPPRIS ALT1 TSL 1 (best) BASIC4.87□□□□□ -1.63
USF1P22415 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC4.87□□□□□ -1.63
USF1P22415 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
USF1P22415 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC4.87□□□□□ -1.63
USF1P22415 AFP-201ENST00000226359 1914 ntTSL 5 BASIC4.87□□□□□ -1.63
USF1P22415 CASC19-248ENST00000641674 1356 ntBASIC4.87□□□□□ -1.63
USF1P22415 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC4.87□□□□□ -1.63
USF1P22415 AL138820.1-201ENST00000617901 5305 ntBASIC4.87□□□□□ -1.63
USF1P22415 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
USF1P22415 LINC01748-203ENST00000634836 3229 ntTSL 5 BASIC4.87□□□□□ -1.63
USF1P22415 IFNE-201ENST00000448696 1475 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
USF1P22415 AL080276.2-201ENST00000637995 2090 ntTSL 3 BASIC4.87□□□□□ -1.63
USF1P22415 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
USF1P22415 ART3-202ENST00000349321 1528 ntAPPRIS P3 TSL 1 (best) BASIC4.87□□□□□ -1.63
USF1P22415 MTCO1P7-201ENST00000419523 1542 ntBASIC4.87□□□□□ -1.63
USF1P22415 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC4.87□□□□□ -1.63
USF1P22415 EDA2R-204ENST00000451436 3464 ntAPPRIS P3 TSL 5 BASIC4.87□□□□□ -1.63
USF1P22415 STXBP4-203ENST00000405898 2229 ntTSL 5 BASIC4.87□□□□□ -1.63
USF1P22415 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC4.87□□□□□ -1.63
USF1P22415 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC4.86□□□□□ -1.63
USF1P22415 PRLR-201ENST00000231423 1679 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
USF1P22415 CLUL1-205ENST00000579494 1742 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
USF1P22415 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
USF1P22415 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
USF1P22415 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
USF1P22415 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
USF1P22415 OR2A7-202ENST00000641841 2062 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
USF1P22415 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
USF1P22415 RLN1-201ENST00000223862 967 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
USF1P22415 U3.7-201ENST00000363668 216 ntBASIC4.86□□□□□ -1.63
USF1P22415 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
USF1P22415 RN7SKP59-201ENST00000410520 314 ntBASIC4.86□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 132.2 ms