Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC6.02□□□□□ -1.45
PTPN9P43378 RPS24-201ENST00000360830 514 ntAPPRIS ALT1 TSL 1 (best) BASIC6.02□□□□□ -1.45
PTPN9P43378 MIR621-201ENST00000384919 96 ntBASIC6.02□□□□□ -1.45
PTPN9P43378 U3.23-201ENST00000391132 200 ntBASIC6.02□□□□□ -1.45
PTPN9P43378 CDKN3-203ENST00000395577 637 ntTSL 5 BASIC6.02□□□□□ -1.45
PTPN9P43378 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC6.02□□□□□ -1.45
PTPN9P43378 HIST1H3PS1-201ENST00000404612 417 ntBASIC6.02□□□□□ -1.45
PTPN9P43378 AC079630.1-201ENST00000412812 585 ntTSL 4 BASIC6.02□□□□□ -1.45
PTPN9P43378 RNGTTP1-201ENST00000420965 728 ntBASIC6.02□□□□□ -1.45
PTPN9P43378 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC6.02□□□□□ -1.45
PTPN9P43378 AL137186.1-201ENST00000440436 480 ntTSL 3 BASIC6.02□□□□□ -1.45
PTPN9P43378 AC105021.1-201ENST00000455347 590 ntTSL 3 BASIC6.02□□□□□ -1.45
PTPN9P43378 ATP5J-207ENST00000457143 589 ntTSL 2 BASIC6.02□□□□□ -1.45
PTPN9P43378 ACA64.1-201ENST00000459171 127 ntBASIC6.02□□□□□ -1.45
PTPN9P43378 RN7SL570P-201ENST00000484405 292 ntBASIC6.02□□□□□ -1.45
PTPN9P43378 AC012123.2-201ENST00000485809 248 ntBASIC6.02□□□□□ -1.45
PTPN9P43378 CENPK-210ENST00000510354 1124 ntTSL 5 BASIC6.02□□□□□ -1.45
PTPN9P43378 AC114781.3-201ENST00000512083 142 ntBASIC6.02□□□□□ -1.45
PTPN9P43378 AC079296.1-202ENST00000521394 960 ntTSL 4 BASIC6.02□□□□□ -1.45
PTPN9P43378 LINC00687-203ENST00000558175 696 ntTSL 3 BASIC6.02□□□□□ -1.45
PTPN9P43378 AC066613.1-201ENST00000559977 1053 ntTSL 2 BASIC6.02□□□□□ -1.45
PTPN9P43378 AC130371.1-201ENST00000577023 230 ntTSL 5 BASIC6.02□□□□□ -1.45
PTPN9P43378 MIR4433B-201ENST00000581329 102 ntBASIC6.02□□□□□ -1.45
PTPN9P43378 AC079315.1-201ENST00000602952 623 ntBASIC6.02□□□□□ -1.45
PTPN9P43378 AL138895.2-201ENST00000603019 178 ntBASIC6.02□□□□□ -1.45
PTPN9P43378 AC093388.1-201ENST00000609166 430 ntBASIC6.02□□□□□ -1.45
PTPN9P43378 AC129915.3-201ENST00000634128 948 ntBASIC6.02□□□□□ -1.45
PTPN9P43378 5S_rRNA.28-201ENST00000638107 119 ntBASIC6.02□□□□□ -1.45
PTPN9P43378 OR8G3P-202ENST00000641572 1255 ntBASIC6.02□□□□□ -1.45
PTPN9P43378 TNFSF11-202ENST00000358545 1520 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
PTPN9P43378 WDR64-201ENST00000366552 4371 ntAPPRIS P1 TSL 5 BASIC6.02□□□□□ -1.45
PTPN9P43378 AL355834.1-201ENST00000556602 3965 ntBASIC6.02□□□□□ -1.45
PTPN9P43378 ESRRG-224ENST00000616180 5194 ntAPPRIS P1 TSL 5 BASIC6.02□□□□□ -1.45
PTPN9P43378 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC6.02□□□□□ -1.45
PTPN9P43378 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
PTPN9P43378 PLCH1-AS1-201ENST00000475196 1308 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
PTPN9P43378 N4BP2L2-IT2-201ENST00000629393 4890 ntBASIC6.01□□□□□ -1.45
PTPN9P43378 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC6.01□□□□□ -1.45
PTPN9P43378 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
PTPN9P43378 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
PTPN9P43378 RNU6-697P-201ENST00000363348 107 ntBASIC6.01□□□□□ -1.45
PTPN9P43378 RNU6-1331P-201ENST00000363658 106 ntBASIC6.01□□□□□ -1.45
PTPN9P43378 RNU6-152P-201ENST00000384037 107 ntBASIC6.01□□□□□ -1.45
PTPN9P43378 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC6.01□□□□□ -1.45
PTPN9P43378 NIFKP3-201ENST00000417799 865 ntBASIC6.01□□□□□ -1.45
PTPN9P43378 DPPA2P2-201ENST00000418220 897 ntBASIC6.01□□□□□ -1.45
PTPN9P43378 MRPS21P2-201ENST00000424704 264 ntBASIC6.01□□□□□ -1.45
PTPN9P43378 AC019117.1-202ENST00000439046 589 ntTSL 3 BASIC6.01□□□□□ -1.45
PTPN9P43378 AC000124.1-201ENST00000448311 957 ntTSL 2 BASIC6.01□□□□□ -1.45
PTPN9P43378 HLA-DPA3-207ENST00000454398 229 ntBASIC6.01□□□□□ -1.45
PTPN9P43378 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC6.01□□□□□ -1.45
PTPN9P43378 PDCD10-216ENST00000492396 814 ntTSL 5 BASIC6.01□□□□□ -1.45
PTPN9P43378 AF250324.1-203ENST00000508156 517 ntTSL 3 BASIC6.01□□□□□ -1.45
PTPN9P43378 AC106806.2-201ENST00000509365 500 ntBASIC6.01□□□□□ -1.45
PTPN9P43378 RNA5SP271-201ENST00000516700 88 ntBASIC6.01□□□□□ -1.45
PTPN9P43378 AP000873.2-204ENST00000530825 375 ntTSL 3 BASIC6.01□□□□□ -1.45
PTPN9P43378 NANOGNBP2-201ENST00000544753 553 ntBASIC6.01□□□□□ -1.45
PTPN9P43378 AL355112.1-201ENST00000550309 1236 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
PTPN9P43378 CR383656.14-201ENST00000551951 406 ntBASIC6.01□□□□□ -1.45
PTPN9P43378 WDR61-205ENST00000558459 884 ntTSL 3 BASIC6.01□□□□□ -1.45
PTPN9P43378 ZNF322P1-201ENST00000568013 1209 ntBASIC6.01□□□□□ -1.45
PTPN9P43378 AC092121.1-201ENST00000569452 202 ntBASIC6.01□□□□□ -1.45
PTPN9P43378 VDAC1P8-204ENST00000589489 997 ntTSL 5 BASIC6.01□□□□□ -1.45
PTPN9P43378 LINC02343-201ENST00000605909 573 ntTSL 4 BASIC6.01□□□□□ -1.45
PTPN9P43378 AC022400.9-201ENST00000623633 273 ntBASIC6.01□□□□□ -1.45
PTPN9P43378 PCAT19-201ENST00000588495 3472 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
PTPN9P43378 AC005261.2-201ENST00000593427 4258 ntBASIC6.01□□□□□ -1.45
PTPN9P43378 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC6.01□□□□□ -1.45
PTPN9P43378 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC6.01□□□□□ -1.45
PTPN9P43378 IPCEF1-202ENST00000367220 1658 ntAPPRIS ALT2 TSL 2 BASIC6.01□□□□□ -1.45
PTPN9P43378 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
PTPN9P43378 ADGRL3-210ENST00000508946 4758 ntAPPRIS ALT2 TSL 5 BASIC6.01□□□□□ -1.45
PTPN9P43378 AC020656.2-201ENST00000613291 5309 ntBASIC6.01□□□□□ -1.45
PTPN9P43378 NLRP3P1-201ENST00000622303 1785 ntBASIC6.01□□□□□ -1.45
PTPN9P43378 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC6□□□□□ -1.45
PTPN9P43378 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC6□□□□□ -1.45
PTPN9P43378 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC6□□□□□ -1.45
PTPN9P43378 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC6□□□□□ -1.45
PTPN9P43378 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC6□□□□□ -1.45
PTPN9P43378 AC232271.1-201ENST00000602455 2715 ntBASIC6□□□□□ -1.45
PTPN9P43378 RABGAP1L-208ENST00000392064 6282 ntTSL 1 (best) BASIC6□□□□□ -1.45
PTPN9P43378 KLHL13-206ENST00000469946 2353 ntTSL 2 BASIC6□□□□□ -1.45
PTPN9P43378 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC6□□□□□ -1.45
PTPN9P43378 CALN1-203ENST00000395276 9189 ntAPPRIS P3 TSL 1 (best) BASIC6□□□□□ -1.45
PTPN9P43378 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC6□□□□□ -1.45
PTPN9P43378 U3.10-201ENST00000364459 214 ntBASIC6□□□□□ -1.45
PTPN9P43378 IL20-201ENST00000367096 925 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
PTPN9P43378 RNU1-136P-201ENST00000384181 164 ntBASIC6□□□□□ -1.45
PTPN9P43378 MIR130A-201ENST00000385274 89 ntBASIC6□□□□□ -1.45
PTPN9P43378 TRAV8-7-201ENST00000390456 341 ntAPPRIS P1 BASIC6□□□□□ -1.45
PTPN9P43378 CCL8-201ENST00000394620 1261 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
PTPN9P43378 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC6□□□□□ -1.45
PTPN9P43378 AC009502.1-203ENST00000416861 496 ntTSL 2 BASIC6□□□□□ -1.45
PTPN9P43378 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC6□□□□□ -1.45
PTPN9P43378 CDY8P-201ENST00000428380 1279 ntBASIC6□□□□□ -1.45
PTPN9P43378 SLC36A1-202ENST00000429484 977 ntTSL 1 (best) BASIC6□□□□□ -1.45
PTPN9P43378 AC242426.1-201ENST00000435270 960 ntBASIC6□□□□□ -1.45
PTPN9P43378 AL606534.1-201ENST00000439562 694 ntTSL 3 BASIC6□□□□□ -1.45
PTPN9P43378 HMGN1P2-201ENST00000445197 310 ntBASIC6□□□□□ -1.45
PTPN9P43378 CDY20P-201ENST00000447528 1279 ntBASIC6□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 83.5 ms