Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC7.15□□□□□ -1.26
COL3A1P02461 DNM1L-201ENST00000266481 3101 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
COL3A1P02461 SLF1-201ENST00000265140 5905 ntAPPRIS P1 TSL 2 BASIC7.15□□□□□ -1.26
COL3A1P02461 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC7.15□□□□□ -1.26
COL3A1P02461 MARCH7-201ENST00000259050 5922 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
COL3A1P02461 EEF1A1P14-201ENST00000421195 1376 ntBASIC7.15□□□□□ -1.26
COL3A1P02461 SYCP2L-207ENST00000543878 2436 ntAPPRIS ALT2 TSL 5 BASIC7.15□□□□□ -1.26
COL3A1P02461 APOOL-203ENST00000622540 6466 ntTSL 5 BASIC7.15□□□□□ -1.27
COL3A1P02461 MTND2P11-201ENST00000423638 648 ntBASIC7.15□□□□□ -1.27
COL3A1P02461 AC017002.1-201ENST00000432268 881 ntTSL 5 BASIC7.15□□□□□ -1.27
COL3A1P02461 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC7.15□□□□□ -1.27
COL3A1P02461 PTMAP6-201ENST00000439110 327 ntBASIC7.15□□□□□ -1.27
COL3A1P02461 RN7SL423P-201ENST00000486202 304 ntBASIC7.15□□□□□ -1.27
COL3A1P02461 RPL15P21-201ENST00000495592 567 ntBASIC7.15□□□□□ -1.27
COL3A1P02461 LINC02513-201ENST00000503465 500 ntTSL 2 BASIC7.15□□□□□ -1.27
COL3A1P02461 AC010451.1-201ENST00000509057 556 ntTSL 3 BASIC7.15□□□□□ -1.27
COL3A1P02461 AC040914.1-201ENST00000518674 318 ntTSL 3 BASIC7.15□□□□□ -1.27
COL3A1P02461 AC136777.2-201ENST00000522979 358 ntBASIC7.15□□□□□ -1.27
COL3A1P02461 AC084824.2-201ENST00000548906 345 ntBASIC7.15□□□□□ -1.27
COL3A1P02461 PDCD6IPP2-207ENST00000566321 1069 ntBASIC7.15□□□□□ -1.27
COL3A1P02461 AC005341.1-201ENST00000571086 708 ntBASIC7.15□□□□□ -1.27
COL3A1P02461 AC040173.1-201ENST00000572479 580 ntTSL 4 BASIC7.15□□□□□ -1.27
COL3A1P02461 AL021707.7-201ENST00000607991 416 ntBASIC7.15□□□□□ -1.27
COL3A1P02461 SAMD9L-209ENST00000610760 1221 ntTSL 1 (best) BASIC7.15□□□□□ -1.27
COL3A1P02461 AL353770.4-201ENST00000614936 468 ntTSL 5 BASIC7.15□□□□□ -1.27
COL3A1P02461 AL590491.2-203ENST00000614969 468 ntTSL 4 BASIC7.15□□□□□ -1.27
COL3A1P02461 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC7.15□□□□□ -1.27
COL3A1P02461 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC7.14□□□□□ -1.27
COL3A1P02461 CTNND1-236ENST00000533667 4990 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
COL3A1P02461 ZNF658-201ENST00000612867 4160 ntAPPRIS P1 TSL 2 BASIC7.14□□□□□ -1.27
COL3A1P02461 AC003973.3-201ENST00000624863 2822 ntBASIC7.14□□□□□ -1.27
COL3A1P02461 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
COL3A1P02461 LIMCH1-201ENST00000313860 6165 ntAPPRIS P3 TSL 1 (best) BASIC7.14□□□□□ -1.27
COL3A1P02461 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
COL3A1P02461 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC7.14□□□□□ -1.27
COL3A1P02461 ZNF436-201ENST00000314011 4071 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
COL3A1P02461 U3.3-201ENST00000362986 216 ntBASIC7.14□□□□□ -1.27
COL3A1P02461 RN7SKP199-201ENST00000410325 305 ntBASIC7.14□□□□□ -1.27
COL3A1P02461 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC7.14□□□□□ -1.27
COL3A1P02461 EEF1B2P5-201ENST00000444820 548 ntBASIC7.14□□□□□ -1.27
COL3A1P02461 SEPT14P1-201ENST00000458703 648 ntBASIC7.14□□□□□ -1.27
COL3A1P02461 RNU6-775P-201ENST00000459318 96 ntBASIC7.14□□□□□ -1.27
COL3A1P02461 SEPT7P9-201ENST00000475691 413 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
COL3A1P02461 AC004815.1-201ENST00000484185 331 ntBASIC7.14□□□□□ -1.27
COL3A1P02461 AC072052.1-201ENST00000496556 306 ntBASIC7.14□□□□□ -1.27
COL3A1P02461 AP006245.2-201ENST00000522004 300 ntBASIC7.14□□□□□ -1.27
COL3A1P02461 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC7.14□□□□□ -1.27
COL3A1P02461 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC7.14□□□□□ -1.27
COL3A1P02461 MEG8-217ENST00000556637 924 ntTSL 5 BASIC7.14□□□□□ -1.27
COL3A1P02461 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC7.14□□□□□ -1.27
COL3A1P02461 AC122134.1-202ENST00000569111 1201 ntBASIC7.14□□□□□ -1.27
COL3A1P02461 AC109460.2-201ENST00000569974 544 ntTSL 3 BASIC7.14□□□□□ -1.27
COL3A1P02461 UBA52-209ENST00000597451 514 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
COL3A1P02461 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
COL3A1P02461 AL034374.2-201ENST00000605281 548 ntBASIC7.14□□□□□ -1.27
COL3A1P02461 AC004948.1-201ENST00000609858 672 ntBASIC7.14□□□□□ -1.27
COL3A1P02461 AC002044.3-201ENST00000623314 541 ntBASIC7.14□□□□□ -1.27
COL3A1P02461 SAMMSON-209ENST00000641222 1100 ntBASIC7.14□□□□□ -1.27
COL3A1P02461 OR2L13-202ENST00000641714 1948 ntAPPRIS P1 BASIC7.14□□□□□ -1.27
COL3A1P02461 ZBTB25-204ENST00000608382 10372 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
COL3A1P02461 CSMD2-210ENST00000619121 13430 ntAPPRIS ALT2 TSL 5 BASIC7.14□□□□□ -1.27
COL3A1P02461 ZNF766-201ENST00000439461 6298 ntAPPRIS P2 TSL 1 (best) BASIC7.14□□□□□ -1.27
COL3A1P02461 GDA-209ENST00000545168 5362 ntTSL 2 BASIC7.14□□□□□ -1.27
COL3A1P02461 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC7.14□□□□□ -1.27
COL3A1P02461 AC104964.3-201ENST00000606115 2860 ntBASIC7.13□□□□□ -1.27
COL3A1P02461 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
COL3A1P02461 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC7.13□□□□□ -1.27
COL3A1P02461 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
COL3A1P02461 SNORA67-201ENST00000384423 137 ntBASIC7.13□□□□□ -1.27
COL3A1P02461 AP000534.2-201ENST00000412729 568 ntBASIC7.13□□□□□ -1.27
COL3A1P02461 DPYD-AS2-201ENST00000422259 788 ntTSL 3 BASIC7.13□□□□□ -1.27
COL3A1P02461 AL389915.2-201ENST00000454576 441 ntBASIC7.13□□□□□ -1.27
COL3A1P02461 TSACC-207ENST00000470342 601 ntTSL 2 BASIC7.13□□□□□ -1.27
COL3A1P02461 CBX1P5-201ENST00000475330 559 ntBASIC7.13□□□□□ -1.27
COL3A1P02461 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC7.13□□□□□ -1.27
COL3A1P02461 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC7.13□□□□□ -1.27
COL3A1P02461 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC7.13□□□□□ -1.27
COL3A1P02461 CDC42P3-201ENST00000518493 633 ntBASIC7.13□□□□□ -1.27
COL3A1P02461 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC7.13□□□□□ -1.27
COL3A1P02461 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC7.13□□□□□ -1.27
COL3A1P02461 SDR42E1P1-201ENST00000611327 477 ntBASIC7.13□□□□□ -1.27
COL3A1P02461 AC063952.1-204ENST00000635496 927 ntTSL 5 BASIC7.13□□□□□ -1.27
COL3A1P02461 ASAH1-224ENST00000636269 685 ntTSL 3 BASIC7.13□□□□□ -1.27
COL3A1P02461 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC7.13□□□□□ -1.27
COL3A1P02461 ZNF224-201ENST00000336976 3980 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
COL3A1P02461 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC7.13□□□□□ -1.27
COL3A1P02461 FGFR1OP-202ENST00000366847 14166 ntAPPRIS P4 TSL 1 (best) BASIC7.13□□□□□ -1.27
COL3A1P02461 RIMKLB-207ENST00000538135 5392 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
COL3A1P02461 NAT2-201ENST00000286479 1322 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
COL3A1P02461 EBF1-211ENST00000622875 4430 ntTSL 5 BASIC7.13□□□□□ -1.27
COL3A1P02461 AC004076.2-201ENST00000620532 3323 ntBASIC7.13□□□□□ -1.27
COL3A1P02461 ASB14-201ENST00000389601 3175 ntAPPRIS ALT2 TSL 5 BASIC7.13□□□□□ -1.27
COL3A1P02461 RMDN2-201ENST00000234195 1985 ntTSL 2 BASIC7.13□□□□□ -1.27
COL3A1P02461 PANDAR-201ENST00000629595 1506 ntBASIC7.13□□□□□ -1.27
COL3A1P02461 OXCT1-206ENST00000512084 1593 ntTSL 2 BASIC7.12□□□□□ -1.27
COL3A1P02461 PDGFRA-206ENST00000508170 2202 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
COL3A1P02461 CFAP57-204ENST00000528956 3037 ntTSL 2 BASIC7.12□□□□□ -1.27
COL3A1P02461 SPATA42-201ENST00000369989 535 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
COL3A1P02461 OR2A25-201ENST00000408898 1014 ntAPPRIS P1 BASIC7.12□□□□□ -1.27
COL3A1P02461 AC007394.1-201ENST00000421941 531 ntBASIC7.12□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 73.5 ms