Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 PDE4B-206ENST00000423207 4546 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
PRKDCP78527 PARP4P1-201ENST00000435945 2337 ntBASIC3.78□□□□□ -1.8
PRKDCP78527 PARN-201ENST00000341484 2100 ntTSL 2 BASIC3.78□□□□□ -1.8
PRKDCP78527 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC3.78□□□□□ -1.8
PRKDCP78527 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC3.78□□□□□ -1.8
PRKDCP78527 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC3.78□□□□□ -1.8
PRKDCP78527 CYCSP19-201ENST00000411715 316 ntBASIC3.78□□□□□ -1.8
PRKDCP78527 RPL12P43-201ENST00000420608 499 ntBASIC3.78□□□□□ -1.8
PRKDCP78527 AC073143.1-201ENST00000436316 395 ntBASIC3.78□□□□□ -1.8
PRKDCP78527 OR13K1P-201ENST00000444577 975 ntBASIC3.78□□□□□ -1.8
PRKDCP78527 SNORA74D-201ENST00000516404 141 ntBASIC3.78□□□□□ -1.8
PRKDCP78527 EQTN-204ENST00000537675 879 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
PRKDCP78527 AL121790.1-201ENST00000554829 738 ntTSL 3 BASIC3.78□□□□□ -1.8
PRKDCP78527 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC3.78□□□□□ -1.8
PRKDCP78527 MIR8089-201ENST00000620165 82 ntBASIC3.78□□□□□ -1.8
PRKDCP78527 SMARCA2-258ENST00000637103 5657 ntTSL 5 BASIC3.78□□□□□ -1.8
PRKDCP78527 KIDINS220-201ENST00000256707 7361 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
PRKDCP78527 AC005703.1-201ENST00000431343 1773 ntTSL 2 BASIC3.78□□□□□ -1.8
PRKDCP78527 SLC25A40-201ENST00000341119 4045 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
PRKDCP78527 MAVS-202ENST00000428216 11714 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.81
PRKDCP78527 RBM33-207ENST00000401878 10149 ntAPPRIS P2 TSL 5 BASIC3.78□□□□□ -1.81
PRKDCP78527 HHLA2-211ENST00000619531 2548 ntAPPRIS P3 TSL 5 BASIC3.78□□□□□ -1.81
PRKDCP78527 LRRC37A-202ENST00000393465 4997 ntAPPRIS ALT2 TSL 5 BASIC3.78□□□□□ -1.81
PRKDCP78527 NRCAM-210ENST00000425651 3915 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.81
PRKDCP78527 SIPA1L2-201ENST00000262861 6555 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
PRKDCP78527 ATP6V1C1-201ENST00000395862 5612 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
PRKDCP78527 KALRN-201ENST00000240874 6537 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
PRKDCP78527 ARID1B-232ENST00000637904 5913 ntAPPRIS ALT2 TSL 5 BASIC3.77□□□□□ -1.81
PRKDCP78527 AC073465.2-201ENST00000440938 498 ntBASIC3.77□□□□□ -1.81
PRKDCP78527 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC3.77□□□□□ -1.81
PRKDCP78527 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC3.77□□□□□ -1.81
PRKDCP78527 AC078820.1-201ENST00000548702 742 ntTSL 3 BASIC3.77□□□□□ -1.81
PRKDCP78527 AC011443.1-201ENST00000599484 365 ntTSL 3 BASIC3.77□□□□□ -1.81
PRKDCP78527 AC073091.2-201ENST00000603205 907 ntBASIC3.77□□□□□ -1.81
PRKDCP78527 AL121890.3-201ENST00000618494 516 ntBASIC3.77□□□□□ -1.81
PRKDCP78527 RAB11A-201ENST00000261890 4930 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
PRKDCP78527 BTBD3-202ENST00000378226 4904 ntAPPRIS P4 TSL 1 (best) BASIC3.77□□□□□ -1.81
PRKDCP78527 CYFIP2-209ENST00000521420 6370 ntTSL 2 BASIC3.77□□□□□ -1.81
PRKDCP78527 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC3.77□□□□□ -1.81
PRKDCP78527 ITGA11-202ENST00000423218 10192 ntAPPRIS ALT1 TSL 2 BASIC3.77□□□□□ -1.81
PRKDCP78527 ZNF300P1-202ENST00000520773 3115 ntTSL 5 BASIC3.77□□□□□ -1.81
PRKDCP78527 CPSF6-202ENST00000435070 6616 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
PRKDCP78527 TMEM33-203ENST00000504986 7482 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
PRKDCP78527 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC3.77□□□□□ -1.81
PRKDCP78527 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC3.77□□□□□ -1.81
PRKDCP78527 SGK3-201ENST00000345714 4055 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
PRKDCP78527 MUC22-201ENST00000561890 6019 ntAPPRIS P1 TSL 2 BASIC3.77□□□□□ -1.81
PRKDCP78527 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
PRKDCP78527 Z95327.1-201ENST00000446082 482 ntBASIC3.77□□□□□ -1.81
PRKDCP78527 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
PRKDCP78527 ZBED3-AS1-209ENST00000512213 681 ntTSL 3 BASIC3.77□□□□□ -1.81
PRKDCP78527 AL121594.2-201ENST00000541658 472 ntBASIC3.77□□□□□ -1.81
PRKDCP78527 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
PRKDCP78527 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC3.77□□□□□ -1.81
PRKDCP78527 CR381572.2-201ENST00000624852 397 ntBASIC3.77□□□□□ -1.81
PRKDCP78527 SUPT3H-206ENST00000637763 498 ntTSL 3 BASIC3.77□□□□□ -1.81
PRKDCP78527 ERG-208ENST00000417133 5023 ntAPPRIS ALT1 TSL 2 BASIC3.77□□□□□ -1.81
PRKDCP78527 RAD54B-201ENST00000297592 1879 ntTSL 2 BASIC3.77□□□□□ -1.81
PRKDCP78527 AC005224.3-201ENST00000584683 2140 ntBASIC3.77□□□□□ -1.81
PRKDCP78527 VPS39-202ENST00000348544 2661 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
PRKDCP78527 MECOM-209ENST00000472280 3593 ntTSL 5 BASIC3.77□□□□□ -1.81
PRKDCP78527 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC3.77□□□□□ -1.81
PRKDCP78527 LY75-201ENST00000263636 6886 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
PRKDCP78527 ELP4-218ENST00000639570 5795 ntTSL 5 BASIC3.77□□□□□ -1.81
PRKDCP78527 PIGN-230ENST00000638977 4601 ntTSL 5 BASIC3.77□□□□□ -1.81
PRKDCP78527 AC012358.3-203ENST00000366287 1110 ntTSL 3 BASIC3.77□□□□□ -1.81
PRKDCP78527 RBMS3-AS2-201ENST00000366321 582 ntTSL 3 BASIC3.77□□□□□ -1.81
PRKDCP78527 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
PRKDCP78527 SNORA70C-201ENST00000384538 135 ntBASIC3.77□□□□□ -1.81
PRKDCP78527 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC3.77□□□□□ -1.81
PRKDCP78527 LINC02020-202ENST00000421006 575 ntTSL 4 BASIC3.77□□□□□ -1.81
PRKDCP78527 GCA-203ENST00000429691 824 ntTSL 3 BASIC3.77□□□□□ -1.81
PRKDCP78527 AP001604.1-201ENST00000447384 954 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
PRKDCP78527 CYP4F27P-201ENST00000514557 494 ntBASIC3.77□□□□□ -1.81
PRKDCP78527 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
PRKDCP78527 MILR1-203ENST00000615220 1196 ntAPPRIS P3 TSL 2 BASIC3.77□□□□□ -1.81
PRKDCP78527 SLC35A5-201ENST00000261034 2444 ntTSL 5 BASIC3.77□□□□□ -1.81
PRKDCP78527 ZNF407-202ENST00000309902 5595 ntTSL 2 BASIC3.77□□□□□ -1.81
PRKDCP78527 MMACHC-201ENST00000401061 5296 ntAPPRIS P1 TSL 2 BASIC3.77□□□□□ -1.81
PRKDCP78527 THOC5-216ENST00000490103 4753 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
PRKDCP78527 AP004243.1-201ENST00000529108 1433 ntAPPRIS P1 TSL 5 BASIC3.77□□□□□ -1.81
PRKDCP78527 GABPB2-202ENST00000368918 8964 ntAPPRIS P3 TSL 1 (best) BASIC3.77□□□□□ -1.81
PRKDCP78527 PKD1L3-201ENST00000620267 5199 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
PRKDCP78527 NSD2-208ENST00000420906 5109 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
PRKDCP78527 ZNF969P-201ENST00000510345 2341 ntBASIC3.77□□□□□ -1.81
PRKDCP78527 ZNF506-201ENST00000443905 4095 ntAPPRIS P3 TSL 2 BASIC3.77□□□□□ -1.81
PRKDCP78527 ADA2-203ENST00000399837 4505 ntAPPRIS P3 TSL 1 (best) BASIC3.77□□□□□ -1.81
PRKDCP78527 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
PRKDCP78527 AC099654.2-201ENST00000433031 1980 ntBASIC3.77□□□□□ -1.81
PRKDCP78527 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
PRKDCP78527 RPL23AP17-201ENST00000401064 499 ntBASIC3.76□□□□□ -1.81
PRKDCP78527 FTH1P10-202ENST00000430907 550 ntBASIC3.76□□□□□ -1.81
PRKDCP78527 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC3.76□□□□□ -1.81
PRKDCP78527 SCARNA10-201ENST00000459255 330 ntBASIC3.76□□□□□ -1.81
PRKDCP78527 LINC00500-201ENST00000515860 539 ntTSL 4 BASIC3.76□□□□□ -1.81
PRKDCP78527 KCTD9P4-201ENST00000526766 1166 ntBASIC3.76□□□□□ -1.81
PRKDCP78527 FAM174B-202ENST00000553393 495 ntTSL 2 BASIC3.76□□□□□ -1.81
PRKDCP78527 AC020661.4-201ENST00000561388 500 ntTSL 3 BASIC3.76□□□□□ -1.81
PRKDCP78527 MSL3P1-202ENST00000440028 1468 ntBASIC3.76□□□□□ -1.81
PRKDCP78527 EYA4-201ENST00000355167 5692 ntTSL 5 BASIC3.76□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 131.5 ms