Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 MTCO1P9-201ENST00000505577 1534 ntBASIC7.15□□□□□ -1.27
MSX1P28360 BCO2-214ENST00000532593 1647 ntTSL 2 BASIC7.15□□□□□ -1.27
MSX1P28360 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC7.15□□□□□ -1.27
MSX1P28360 STXBP5-201ENST00000321680 3456 ntAPPRIS ALT1 TSL 5 BASIC7.15□□□□□ -1.27
MSX1P28360 TTC7B-201ENST00000328459 19458 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.27
MSX1P28360 AGR2-203ENST00000419304 1778 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.27
MSX1P28360 RGS7-201ENST00000348120 1980 ntTSL 1 (best) BASIC7.15□□□□□ -1.27
MSX1P28360 SGMS2-203ENST00000394686 2127 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.27
MSX1P28360 ZNF845-202ENST00000595091 4413 ntAPPRIS P1 TSL 4 BASIC7.15□□□□□ -1.27
MSX1P28360 RGS7-202ENST00000366563 2206 ntTSL 5 BASIC7.15□□□□□ -1.27
MSX1P28360 CXCR6-202ENST00000438735 2242 ntAPPRIS P1 TSL 3 BASIC7.15□□□□□ -1.27
MSX1P28360 TFDP2-212ENST00000486111 2360 ntAPPRIS P3 TSL 1 (best) BASIC7.15□□□□□ -1.27
MSX1P28360 ZNF45-204ENST00000589703 2409 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.27
MSX1P28360 ZNF396-201ENST00000306346 2788 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
MSX1P28360 POU2F3-201ENST00000260264 2903 ntTSL 2 BASIC7.14□□□□□ -1.27
MSX1P28360 AC004941.1-201ENST00000417506 3120 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
MSX1P28360 FBXW7-203ENST00000296555 3572 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
MSX1P28360 GMFB-209ENST00000616146 4125 ntAPPRIS P1 TSL 5 BASIC7.14□□□□□ -1.27
MSX1P28360 ERAP1-202ENST00000443439 4805 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
MSX1P28360 ITPR1-202ENST00000354582 10242 ntTSL 5 BASIC7.14□□□□□ -1.27
MSX1P28360 LMO7-202ENST00000341547 7237 ntAPPRIS P3 TSL 1 (best) BASIC7.14□□□□□ -1.27
MSX1P28360 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
MSX1P28360 PSMA6-201ENST00000261479 1029 ntAPPRIS P2 TSL 1 (best) BASIC7.14□□□□□ -1.27
MSX1P28360 BCAT1-202ENST00000342945 4319 ntTSL 2 BASIC7.14□□□□□ -1.27
MSX1P28360 Y_RNA.1-201ENST00000352915 104 ntBASIC7.14□□□□□ -1.27
MSX1P28360 DYNLRB1-202ENST00000357156 675 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
MSX1P28360 S100A5-202ENST00000368718 710 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
MSX1P28360 FABP3-201ENST00000373713 725 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
MSX1P28360 RNU6-723P-201ENST00000383973 107 ntBASIC7.14□□□□□ -1.27
MSX1P28360 MIR606-201ENST00000384851 96 ntBASIC7.14□□□□□ -1.27
MSX1P28360 TRGV3-201ENST00000390346 537 ntAPPRIS P1 BASIC7.14□□□□□ -1.27
MSX1P28360 PLPPR1-202ENST00000395056 2318 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
MSX1P28360 DYNC2LI1-203ENST00000398823 2903 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
MSX1P28360 RPL5P35-201ENST00000398869 816 ntBASIC7.14□□□□□ -1.27
MSX1P28360 IL6-203ENST00000401651 539 ntTSL 2 BASIC7.14□□□□□ -1.27
MSX1P28360 ALS2CR12-203ENST00000405148 2013 ntAPPRIS P3 TSL 5 BASIC7.14□□□□□ -1.27
MSX1P28360 LARP1P1-201ENST00000407692 292 ntBASIC7.14□□□□□ -1.27
MSX1P28360 RNU6-77P-201ENST00000410554 91 ntBASIC7.14□□□□□ -1.27
MSX1P28360 AC092745.2-202ENST00000411880 369 ntBASIC7.14□□□□□ -1.27
MSX1P28360 HMGB1P11-201ENST00000413899 637 ntBASIC7.14□□□□□ -1.27
MSX1P28360 LINC01440-201ENST00000416190 1340 ntTSL 5 BASIC7.14□□□□□ -1.27
MSX1P28360 CRIP1P3-201ENST00000416794 220 ntBASIC7.14□□□□□ -1.27
MSX1P28360 HMGB3P20-201ENST00000417997 600 ntBASIC7.14□□□□□ -1.27
MSX1P28360 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC7.14□□□□□ -1.27
MSX1P28360 AL596451.1-201ENST00000419824 572 ntTSL 5 BASIC7.14□□□□□ -1.27
MSX1P28360 AC010145.1-201ENST00000422415 516 ntTSL 5 BASIC7.14□□□□□ -1.27
MSX1P28360 AC009495.3-201ENST00000425688 779 ntTSL 3 BASIC7.14□□□□□ -1.27
MSX1P28360 AJ006995.1-201ENST00000433344 572 ntTSL 3 BASIC7.14□□□□□ -1.27
MSX1P28360 SDCBPP1-201ENST00000440192 890 ntBASIC7.14□□□□□ -1.27
MSX1P28360 AL353093.1-201ENST00000441292 436 ntBASIC7.14□□□□□ -1.27
MSX1P28360 SYNJ2-IT1-201ENST00000442328 599 ntTSL 3 BASIC7.14□□□□□ -1.27
MSX1P28360 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC7.14□□□□□ -1.27
MSX1P28360 ARMC8P1-201ENST00000443069 1289 ntBASIC7.14□□□□□ -1.27
MSX1P28360 AC239860.1-201ENST00000444680 1270 ntBASIC7.14□□□□□ -1.27
MSX1P28360 AC009970.1-201ENST00000444873 432 ntTSL 3 BASIC7.14□□□□□ -1.27
MSX1P28360 AP001604.1-201ENST00000447384 954 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
MSX1P28360 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC7.14□□□□□ -1.27
MSX1P28360 MORF4L2-210ENST00000451301 1830 ntAPPRIS P1 TSL 2 BASIC7.14□□□□□ -1.27
MSX1P28360 AL139156.3-201ENST00000454802 394 ntBASIC7.14□□□□□ -1.27
MSX1P28360 AL590326.1-201ENST00000460857 334 ntBASIC7.14□□□□□ -1.27
MSX1P28360 RN7SL89P-201ENST00000480252 283 ntBASIC7.14□□□□□ -1.27
MSX1P28360 CREM-234ENST00000484283 660 ntTSL 5 BASIC7.14□□□□□ -1.27
MSX1P28360 ESRRG-222ENST00000493748 2074 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
MSX1P28360 NPM1P27-201ENST00000502784 830 ntBASIC7.14□□□□□ -1.27
MSX1P28360 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC7.14□□□□□ -1.27
MSX1P28360 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC7.14□□□□□ -1.27
MSX1P28360 AC010493.1-201ENST00000513479 292 ntBASIC7.14□□□□□ -1.27
MSX1P28360 PDLIM5-219ENST00000514743 3356 ntTSL 2 BASIC7.14□□□□□ -1.27
MSX1P28360 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC7.14□□□□□ -1.27
MSX1P28360 FBXO16-207ENST00000518734 995 ntAPPRIS ALT2 TSL 1 (best) BASIC7.14□□□□□ -1.27
MSX1P28360 AC084026.2-201ENST00000521101 642 ntTSL 3 BASIC7.14□□□□□ -1.27
MSX1P28360 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC7.14□□□□□ -1.27
MSX1P28360 AC109635.6-201ENST00000525487 1113 ntBASIC7.14□□□□□ -1.27
MSX1P28360 AC069360.1-202ENST00000533941 557 ntTSL 3 BASIC7.14□□□□□ -1.27
MSX1P28360 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC7.14□□□□□ -1.27
MSX1P28360 AC025260.1-201ENST00000548858 430 ntBASIC7.14□□□□□ -1.27
MSX1P28360 HIGD1AP9-201ENST00000550710 279 ntBASIC7.14□□□□□ -1.27
MSX1P28360 AC007424.1-203ENST00000554613 687 ntBASIC7.14□□□□□ -1.27
MSX1P28360 FDPSP3-201ENST00000556903 1013 ntBASIC7.14□□□□□ -1.27
MSX1P28360 WDR61-205ENST00000558459 884 ntTSL 3 BASIC7.14□□□□□ -1.27
MSX1P28360 AC107954.1-201ENST00000565906 727 ntBASIC7.14□□□□□ -1.27
MSX1P28360 MIR5697-201ENST00000578045 78 ntBASIC7.14□□□□□ -1.27
MSX1P28360 AC006441.3-201ENST00000580121 456 ntTSL 4 BASIC7.14□□□□□ -1.27
MSX1P28360 AC005537.1-202ENST00000585996 666 ntTSL 5 BASIC7.14□□□□□ -1.27
MSX1P28360 AC011712.1-201ENST00000588959 234 ntBASIC7.14□□□□□ -1.27
MSX1P28360 AC011990.1-201ENST00000592809 734 ntTSL 3 BASIC7.14□□□□□ -1.27
MSX1P28360 RPS11-202ENST00000594493 575 ntTSL 3 BASIC7.14□□□□□ -1.27
MSX1P28360 VN1R80P-201ENST00000597126 338 ntBASIC7.14□□□□□ -1.27
MSX1P28360 AC068802.1-201ENST00000603420 732 ntBASIC7.14□□□□□ -1.27
MSX1P28360 RBM44-206ENST00000611254 1427 ntTSL 2 BASIC7.14□□□□□ -1.27
MSX1P28360 AC036108.4-201ENST00000611654 2516 ntBASIC7.14□□□□□ -1.27
MSX1P28360 AC040896.1-201ENST00000613819 479 ntBASIC7.14□□□□□ -1.27
MSX1P28360 AC092650.2-201ENST00000619984 902 ntBASIC7.14□□□□□ -1.27
MSX1P28360 AC006504.8-201ENST00000621046 635 ntBASIC7.14□□□□□ -1.27
MSX1P28360 AL353747.4-202ENST00000625787 674 ntTSL 3 BASIC7.14□□□□□ -1.27
MSX1P28360 AC012557.3-201ENST00000626439 255 ntBASIC7.14□□□□□ -1.27
MSX1P28360 AC087280.2-201ENST00000637205 4822 ntTSL 5 BASIC7.14□□□□□ -1.27
MSX1P28360 5_8S_rRNA.6-201ENST00000637374 152 ntBASIC7.14□□□□□ -1.27
MSX1P28360 AL023806.3-201ENST00000638502 2704 ntBASIC7.14□□□□□ -1.27
MSX1P28360 NACA-203ENST00000454682 6629 ntTSL 5 BASIC7.14□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 78.5 ms