Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC8.04□□□□□ -1.12
HLA-CQ95604 PARP4-201ENST00000381989 5474 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
HLA-CQ95604 AC024337.1-201ENST00000558860 1562 ntTSL 4 BASIC8.04□□□□□ -1.12
HLA-CQ95604 PIWIL3-202ENST00000527701 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC8.04□□□□□ -1.12
HLA-CQ95604 RPL7L1-208ENST00000493763 4476 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
HLA-CQ95604 LUZP1-202ENST00000314174 3715 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
HLA-CQ95604 POLD3-201ENST00000263681 3821 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
HLA-CQ95604 HAUS2-201ENST00000260372 3949 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
HLA-CQ95604 AL589642.1-201ENST00000430787 2582 ntTSL 2 BASIC8.04□□□□□ -1.12
HLA-CQ95604 MAATS1-201ENST00000273390 4433 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
HLA-CQ95604 GOSR2-215ENST00000638374 2683 ntTSL 5 BASIC8.04□□□□□ -1.12
HLA-CQ95604 HIVEP2-202ENST00000367603 9724 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
HLA-CQ95604 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
HLA-CQ95604 NRG3-204ENST00000404576 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC8.03□□□□□ -1.12
HLA-CQ95604 PTPRM-202ENST00000400053 5292 ntAPPRIS ALT2 TSL 5 BASIC8.03□□□□□ -1.12
HLA-CQ95604 AC093155.3-201ENST00000370548 2013 ntAPPRIS P1 TSL 2 BASIC8.03□□□□□ -1.12
HLA-CQ95604 STXBP5-AS1-209ENST00000606831 2025 ntTSL 5 BASIC8.03□□□□□ -1.12
HLA-CQ95604 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC8.03□□□□□ -1.12
HLA-CQ95604 AL590004.4-201ENST00000566733 7060 ntBASIC8.03□□□□□ -1.12
HLA-CQ95604 PAX6-259ENST00000639916 2622 ntAPPRIS ALT1 TSL 1 (best) BASIC8.03□□□□□ -1.12
HLA-CQ95604 ZNF169-203ENST00000480716 2716 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
HLA-CQ95604 ERMAP-201ENST00000328249 3949 ntAPPRIS ALT2 TSL 1 (best) BASIC8.03□□□□□ -1.12
HLA-CQ95604 MRNIP-204ENST00000518219 4145 ntAPPRIS ALT2 TSL 1 (best) BASIC8.03□□□□□ -1.12
HLA-CQ95604 NANOG-201ENST00000229307 5183 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
HLA-CQ95604 CNTN4-202ENST00000397461 5198 ntAPPRIS P1 TSL 5 BASIC8.03□□□□□ -1.12
HLA-CQ95604 APH1B-201ENST00000261879 4189 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
HLA-CQ95604 C9orf131-205ENST00000421362 3259 ntAPPRIS ALT2 TSL 4 BASIC8.03□□□□□ -1.12
HLA-CQ95604 ASNSD1-201ENST00000260952 2450 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
HLA-CQ95604 NDUFS1-203ENST00000432169 2080 ntTSL 2 BASIC8.03□□□□□ -1.12
HLA-CQ95604 AC066616.2-201ENST00000559334 1481 ntBASIC8.03□□□□□ -1.12
HLA-CQ95604 SULT1C2-205ENST00000437390 1359 ntTSL 2 BASIC8.03□□□□□ -1.12
HLA-CQ95604 GPATCH11-202ENST00000409774 3906 ntAPPRIS P1 TSL 2 BASIC8.03□□□□□ -1.12
HLA-CQ95604 ORM1-201ENST00000259396 802 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
HLA-CQ95604 OR6P1-201ENST00000334632 954 ntAPPRIS P1 BASIC8.03□□□□□ -1.12
HLA-CQ95604 OR2T6-201ENST00000355728 927 ntAPPRIS P1 BASIC8.03□□□□□ -1.12
HLA-CQ95604 Y_RNA.315-201ENST00000365117 102 ntBASIC8.03□□□□□ -1.12
HLA-CQ95604 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC8.03□□□□□ -1.12
HLA-CQ95604 RPS3AP5-201ENST00000389400 821 ntBASIC8.03□□□□□ -1.12
HLA-CQ95604 RNA5SP105-201ENST00000391123 113 ntBASIC8.03□□□□□ -1.12
HLA-CQ95604 SAMD13-206ENST00000394834 785 ntAPPRIS P1 TSL 2 BASIC8.03□□□□□ -1.12
HLA-CQ95604 SNORA11B-201ENST00000408175 129 ntBASIC8.03□□□□□ -1.12
HLA-CQ95604 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC8.03□□□□□ -1.12
HLA-CQ95604 FTOP1-201ENST00000419363 861 ntBASIC8.03□□□□□ -1.12
HLA-CQ95604 LINC01058-201ENST00000420694 448 ntTSL 5 BASIC8.03□□□□□ -1.12
HLA-CQ95604 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC8.03□□□□□ -1.12
HLA-CQ95604 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC8.03□□□□□ -1.12
HLA-CQ95604 AL133319.1-201ENST00000447848 777 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
HLA-CQ95604 RPL26P28-201ENST00000451325 435 ntBASIC8.03□□□□□ -1.12
HLA-CQ95604 HBBP1-202ENST00000454892 455 ntTSL 2 BASIC8.03□□□□□ -1.12
HLA-CQ95604 RPL18AP17-201ENST00000455326 198 ntBASIC8.03□□□□□ -1.12
HLA-CQ95604 KBTBD8-202ENST00000460576 984 ntTSL 2 BASIC8.03□□□□□ -1.12
HLA-CQ95604 RN7SL152P-201ENST00000484176 298 ntBASIC8.03□□□□□ -1.12
HLA-CQ95604 RN7SL655P-201ENST00000486087 298 ntBASIC8.03□□□□□ -1.12
HLA-CQ95604 RPL36AP51-201ENST00000487216 318 ntBASIC8.03□□□□□ -1.12
HLA-CQ95604 USP17L23-201ENST00000506619 551 ntAPPRIS P1 BASIC8.03□□□□□ -1.12
HLA-CQ95604 HMGB1P28-201ENST00000507778 552 ntBASIC8.03□□□□□ -1.12
HLA-CQ95604 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC8.03□□□□□ -1.12
HLA-CQ95604 AC097103.2-205ENST00000515247 567 ntTSL 4 BASIC8.03□□□□□ -1.12
HLA-CQ95604 AC018682.2-201ENST00000517716 399 ntTSL 5 BASIC8.03□□□□□ -1.12
HLA-CQ95604 IGHVII-60-1-201ENST00000519079 256 ntBASIC8.03□□□□□ -1.12
HLA-CQ95604 AP003472.2-201ENST00000523554 639 ntTSL 3 BASIC8.03□□□□□ -1.12
HLA-CQ95604 AL355836.1-201ENST00000555951 870 ntBASIC8.03□□□□□ -1.12
HLA-CQ95604 AC138749.2-201ENST00000566048 167 ntBASIC8.03□□□□□ -1.12
HLA-CQ95604 AC007431.2-201ENST00000577189 563 ntTSL 2 BASIC8.03□□□□□ -1.12
HLA-CQ95604 AC138207.8-206ENST00000580053 637 ntTSL 5 BASIC8.03□□□□□ -1.12
HLA-CQ95604 RN7SL473P-201ENST00000580341 299 ntBASIC8.03□□□□□ -1.12
HLA-CQ95604 AC011516.1-201ENST00000599129 180 ntTSL 3 BASIC8.03□□□□□ -1.12
HLA-CQ95604 AC005303.1-201ENST00000607906 740 ntTSL 5 BASIC8.03□□□□□ -1.12
HLA-CQ95604 AC093788.1-201ENST00000609356 927 ntBASIC8.03□□□□□ -1.12
HLA-CQ95604 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC8.03□□□□□ -1.12
HLA-CQ95604 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC8.03□□□□□ -1.12
HLA-CQ95604 AC040896.1-201ENST00000613819 479 ntBASIC8.03□□□□□ -1.12
HLA-CQ95604 AL122125.1-201ENST00000616999 600 ntBASIC8.03□□□□□ -1.12
HLA-CQ95604 DLEU1_2.1-201ENST00000617920 342 ntBASIC8.03□□□□□ -1.12
HLA-CQ95604 AL713922.2-201ENST00000619384 716 ntBASIC8.03□□□□□ -1.12
HLA-CQ95604 AL683826.1-201ENST00000624104 627 ntBASIC8.03□□□□□ -1.12
HLA-CQ95604 AL132796.3-201ENST00000624703 900 ntBASIC8.03□□□□□ -1.12
HLA-CQ95604 AC134503.1-201ENST00000633048 54 ntBASIC8.03□□□□□ -1.12
HLA-CQ95604 ACTBP13-201ENST00000423971 3959 ntBASIC8.03□□□□□ -1.12
HLA-CQ95604 SH3PXD2A-202ENST00000355946 11245 ntAPPRIS P2 TSL 1 (best) BASIC8.03□□□□□ -1.12
HLA-CQ95604 MBP-206ENST00000397863 4800 ntTSL 3 BASIC8.03□□□□□ -1.12
HLA-CQ95604 C4orf46-202ENST00000508457 3358 ntTSL 5 BASIC8.03□□□□□ -1.12
HLA-CQ95604 MCM10-206ENST00000484800 3157 ntAPPRIS P4 TSL 1 (best) BASIC8.03□□□□□ -1.12
HLA-CQ95604 TCF4-207ENST00000540999 2572 ntTSL 2 BASIC8.03□□□□□ -1.12
HLA-CQ95604 CRNKL1-201ENST00000377327 4370 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
HLA-CQ95604 CCR9-204ENST00000422395 1331 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
HLA-CQ95604 SNCA-201ENST00000336904 3041 ntAPPRIS P1 TSL 2 BASIC8.03□□□□□ -1.12
HLA-CQ95604 TMOD2-203ENST00000539962 3000 ntTSL 2 BASIC8.03□□□□□ -1.12
HLA-CQ95604 MAPK6PS2-201ENST00000379571 2060 ntBASIC8.02□□□□□ -1.12
HLA-CQ95604 NUP214-201ENST00000359428 7600 ntAPPRIS P3 TSL 1 (best) BASIC8.02□□□□□ -1.12
HLA-CQ95604 URB1-201ENST00000382751 10832 ntAPPRIS P1 TSL 1 (best) BASIC8.02□□□□□ -1.12
HLA-CQ95604 CAPRIN1-209ENST00000530820 3454 ntAPPRIS ALT2 TSL 5 BASIC8.02□□□□□ -1.12
HLA-CQ95604 MEIOB-205ENST00000470044 1857 ntTSL 2 BASIC8.02□□□□□ -1.12
HLA-CQ95604 RAD51B-211ENST00000487861 1673 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
HLA-CQ95604 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC8.02□□□□□ -1.13
HLA-CQ95604 ZNF736P3Y-201ENST00000428264 1465 ntBASIC8.02□□□□□ -1.13
HLA-CQ95604 NF1P9-201ENST00000629326 2008 ntBASIC8.02□□□□□ -1.13
HLA-CQ95604 CPEB4-201ENST00000265085 9483 ntAPPRIS P1 TSL 1 (best) BASIC8.02□□□□□ -1.13
HLA-CQ95604 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC8.02□□□□□ -1.13
HLA-CQ95604 PNN-201ENST00000216832 3576 ntAPPRIS P1 TSL 1 (best) BASIC8.02□□□□□ -1.13
Retrieved 100 of 98,524 protein–RNA pairs in 106.2 ms