Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 ZNF445-202ENST00000425708 10052 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL4A4P53420 SORBS1-219ENST00000607232 4374 ntAPPRIS ALT2 TSL 5 BASIC5.88□□□□□ -1.47
COL4A4P53420 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL4A4P53420 ANKFY1-201ENST00000341657 7418 ntAPPRIS ALT1 TSL 5 BASIC5.88□□□□□ -1.47
COL4A4P53420 SEC22A-201ENST00000309934 4228 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL4A4P53420 CCNT1-201ENST00000261900 6973 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL4A4P53420 VWA3A-202ENST00000389398 4600 ntAPPRIS P2 TSL 5 BASIC5.88□□□□□ -1.47
COL4A4P53420 CDK12-202ENST00000447079 8336 ntAPPRIS P3 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL4A4P53420 ZNF733P-202ENST00000444809 1573 ntBASIC5.88□□□□□ -1.47
COL4A4P53420 ZNF969P-201ENST00000510345 2341 ntBASIC5.88□□□□□ -1.47
COL4A4P53420 ALG13-203ENST00000394780 4133 ntAPPRIS P1 TSL 2 BASIC5.88□□□□□ -1.47
COL4A4P53420 RN7SKP95-201ENST00000362860 303 ntBASIC5.88□□□□□ -1.47
COL4A4P53420 SNORA17.1-201ENST00000362945 126 ntBASIC5.88□□□□□ -1.47
COL4A4P53420 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
COL4A4P53420 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC5.88□□□□□ -1.47
COL4A4P53420 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC5.88□□□□□ -1.47
COL4A4P53420 AC211486.3-201ENST00000412694 621 ntBASIC5.88□□□□□ -1.47
COL4A4P53420 AC008060.2-201ENST00000415333 468 ntTSL 3 BASIC5.88□□□□□ -1.47
COL4A4P53420 AL359378.2-201ENST00000415575 746 ntTSL 2 BASIC5.88□□□□□ -1.47
COL4A4P53420 AC093162.1-201ENST00000419682 124 ntBASIC5.88□□□□□ -1.47
COL4A4P53420 RNGTTP1-201ENST00000420965 728 ntBASIC5.88□□□□□ -1.47
COL4A4P53420 OR10T1P-201ENST00000424327 947 ntBASIC5.88□□□□□ -1.47
COL4A4P53420 AC016712.1-201ENST00000431088 378 ntBASIC5.88□□□□□ -1.47
COL4A4P53420 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
COL4A4P53420 ARPP21-218ENST00000438071 1103 ntTSL 3 BASIC5.88□□□□□ -1.47
COL4A4P53420 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC5.88□□□□□ -1.47
COL4A4P53420 LINC02271-202ENST00000506379 596 ntTSL 4 BASIC5.88□□□□□ -1.47
COL4A4P53420 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC5.88□□□□□ -1.47
COL4A4P53420 HMGB1P40-201ENST00000525121 540 ntBASIC5.88□□□□□ -1.47
COL4A4P53420 AC130404.1-201ENST00000539362 739 ntTSL 2 BASIC5.88□□□□□ -1.47
COL4A4P53420 MIR3934-201ENST00000579806 107 ntBASIC5.88□□□□□ -1.47
COL4A4P53420 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC5.88□□□□□ -1.47
COL4A4P53420 ZNF253-205ENST00000640599 1208 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
COL4A4P53420 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC5.88□□□□□ -1.47
COL4A4P53420 CTNND1-216ENST00000527467 5071 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
COL4A4P53420 CTNND1-229ENST00000531014 5053 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
COL4A4P53420 MSR1-204ENST00000381998 2826 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
COL4A4P53420 BDNF-203ENST00000395978 3988 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL4A4P53420 VIT-206ENST00000457137 1344 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
COL4A4P53420 ZNF658-201ENST00000612867 4160 ntAPPRIS P1 TSL 2 BASIC5.87□□□□□ -1.47
COL4A4P53420 CASC19-221ENST00000641309 1382 ntBASIC5.87□□□□□ -1.47
COL4A4P53420 AC011503.1-201ENST00000596326 1585 ntTSL 2 BASIC5.87□□□□□ -1.47
COL4A4P53420 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
COL4A4P53420 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL4A4P53420 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC5.87□□□□□ -1.47
COL4A4P53420 POLA1-201ENST00000379059 5440 ntAPPRIS P3 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL4A4P53420 POLA1-206ENST00000611764 5434 ntAPPRIS ALT2 TSL 5 BASIC5.87□□□□□ -1.47
COL4A4P53420 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
COL4A4P53420 ZNF229-203ENST00000613197 4835 ntAPPRIS ALT2 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL4A4P53420 SOX6-201ENST00000316399 8808 ntAPPRIS P3 TSL 5 BASIC5.87□□□□□ -1.47
COL4A4P53420 TRDC-201ENST00000390477 720 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
COL4A4P53420 CRIP1P1-201ENST00000427567 185 ntBASIC5.87□□□□□ -1.47
COL4A4P53420 ATP13A4-AS1-202ENST00000431512 394 ntTSL 3 BASIC5.87□□□□□ -1.47
COL4A4P53420 RHOT1P3-201ENST00000436571 331 ntBASIC5.87□□□□□ -1.47
COL4A4P53420 CEACAMP9-201ENST00000442990 513 ntBASIC5.87□□□□□ -1.47
COL4A4P53420 snoU13.29-201ENST00000459370 104 ntBASIC5.87□□□□□ -1.47
COL4A4P53420 AC079858.1-201ENST00000507842 448 ntTSL 3 BASIC5.87□□□□□ -1.47
COL4A4P53420 RN7SKP147-201ENST00000517154 244 ntBASIC5.87□□□□□ -1.47
COL4A4P53420 SEPT10P1-201ENST00000517342 1162 ntBASIC5.87□□□□□ -1.47
COL4A4P53420 AC074031.1-201ENST00000550634 734 ntTSL 3 BASIC5.87□□□□□ -1.47
COL4A4P53420 AC022469.1-201ENST00000555291 656 ntTSL 3 BASIC5.87□□□□□ -1.47
COL4A4P53420 DUXB-201ENST00000633875 1079 ntAPPRIS P1 TSL 3 BASIC5.87□□□□□ -1.47
COL4A4P53420 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
COL4A4P53420 TYW3-201ENST00000370867 3430 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL4A4P53420 QRSL1-202ENST00000369046 4106 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL4A4P53420 LRRN3-201ENST00000308478 3099 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL4A4P53420 NBPF12-205ENST00000617614 4630 ntTSL 5 BASIC5.87□□□□□ -1.47
COL4A4P53420 OR1E1-201ENST00000322608 1307 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
COL4A4P53420 TCP11-207ENST00000418521 1575 ntAPPRIS ALT2 TSL 5 BASIC5.87□□□□□ -1.47
COL4A4P53420 TXNRD1-212ENST00000526390 3808 ntTSL 5 BASIC5.87□□□□□ -1.47
COL4A4P53420 GPRIN3-202ENST00000609438 14244 ntAPPRIS P1 TSL 2 BASIC5.87□□□□□ -1.47
COL4A4P53420 CTNND1-218ENST00000528232 5745 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
COL4A4P53420 CTNND1-223ENST00000529986 5727 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
COL4A4P53420 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
COL4A4P53420 GNS-202ENST00000418919 4877 ntAPPRIS ALT2 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL4A4P53420 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC5.86□□□□□ -1.47
COL4A4P53420 FAM197Y2-202ENST00000448006 2338 ntTSL 2 BASIC5.86□□□□□ -1.47
COL4A4P53420 OR2T2-202ENST00000641925 3530 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
COL4A4P53420 NFATC3-201ENST00000329524 6144 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
COL4A4P53420 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC5.86□□□□□ -1.47
COL4A4P53420 TEX41-207ENST00000445791 4635 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
COL4A4P53420 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
COL4A4P53420 ZEB2-244ENST00000638007 9140 ntTSL 5 BASIC5.86□□□□□ -1.47
COL4A4P53420 ZRANB3-211ENST00000619650 2494 ntTSL 5 BASIC5.86□□□□□ -1.47
COL4A4P53420 NBPF26-202ENST00000611287 2701 ntTSL 5 BASIC5.86□□□□□ -1.47
COL4A4P53420 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC5.86□□□□□ -1.47
COL4A4P53420 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
COL4A4P53420 SCARB2-207ENST00000638295 4507 ntTSL 5 BASIC5.86□□□□□ -1.47
COL4A4P53420 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL4A4P53420 STIL-201ENST00000337817 5087 ntAPPRIS ALT2 TSL 5 BASIC5.86□□□□□ -1.47
COL4A4P53420 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
COL4A4P53420 SNURFL-201ENST00000309296 343 ntBASIC5.86□□□□□ -1.47
COL4A4P53420 RN7SKP113-201ENST00000363891 295 ntBASIC5.86□□□□□ -1.47
COL4A4P53420 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC5.86□□□□□ -1.47
COL4A4P53420 NANOGP9-201ENST00000439890 892 ntBASIC5.86□□□□□ -1.47
COL4A4P53420 AC092647.3-201ENST00000443044 633 ntBASIC5.86□□□□□ -1.47
COL4A4P53420 MAL2-208ENST00000523307 556 ntTSL 4 BASIC5.86□□□□□ -1.47
COL4A4P53420 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC5.86□□□□□ -1.47
COL4A4P53420 RPL26-204ENST00000578812 1002 ntTSL 2 BASIC5.86□□□□□ -1.47
COL4A4P53420 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC5.86□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 138.3 ms