Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC6.62□□□□□ -1.35
BRCA1P38398 LINC02404-201ENST00000546710 1188 ntTSL 5 BASIC6.62□□□□□ -1.35
BRCA1P38398 AC022211.1-201ENST00000579554 717 ntTSL 3 BASIC6.62□□□□□ -1.35
BRCA1P38398 AP005230.1-203ENST00000582086 887 ntTSL 2 BASIC6.62□□□□□ -1.35
BRCA1P38398 AP000769.2-201ENST00000602344 396 ntBASIC6.62□□□□□ -1.35
BRCA1P38398 AL627309.5-201ENST00000484859 4860 ntTSL 5 BASIC6.62□□□□□ -1.35
BRCA1P38398 DTNA-225ENST00000595022 6016 ntAPPRIS ALT2 TSL 1 (best) BASIC6.62□□□□□ -1.35
BRCA1P38398 PSEN1-201ENST00000324501 6078 ntAPPRIS P4 TSL 1 (best) BASIC6.62□□□□□ -1.35
BRCA1P38398 RBBP4-202ENST00000373493 7943 ntAPPRIS P3 TSL 1 (best) BASIC6.62□□□□□ -1.35
BRCA1P38398 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
BRCA1P38398 MSR1-202ENST00000350896 3572 ntTSL 5 BASIC6.62□□□□□ -1.35
BRCA1P38398 FOCAD-216ENST00000605086 4195 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
BRCA1P38398 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
BRCA1P38398 CCP110-202ENST00000396208 5151 ntAPPRIS P3 TSL 1 (best) BASIC6.62□□□□□ -1.35
BRCA1P38398 ADGRL2-202ENST00000359929 4674 ntAPPRIS P2 TSL 1 (best) BASIC6.62□□□□□ -1.35
BRCA1P38398 AKAP13-203ENST00000394518 13215 ntAPPRIS ALT2 TSL 1 (best) BASIC6.62□□□□□ -1.35
BRCA1P38398 MDM4-204ENST00000367183 9098 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
BRCA1P38398 MTRNR2L3-201ENST00000543500 1539 ntAPPRIS P1 BASIC6.62□□□□□ -1.35
BRCA1P38398 ART3-203ENST00000355810 1561 ntAPPRIS ALT2 TSL 1 (best) BASIC6.62□□□□□ -1.35
BRCA1P38398 AC098820.3-201ENST00000414135 976 ntTSL 3 BASIC6.62□□□□□ -1.35
BRCA1P38398 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC6.62□□□□□ -1.35
BRCA1P38398 AL590723.1-201ENST00000426030 629 ntTSL 5 BASIC6.62□□□□□ -1.35
BRCA1P38398 UBE2L5P-201ENST00000436446 465 ntAPPRIS P1 BASIC6.62□□□□□ -1.35
BRCA1P38398 AL590399.4-201ENST00000436561 601 ntBASIC6.62□□□□□ -1.35
BRCA1P38398 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC6.62□□□□□ -1.35
BRCA1P38398 RBMY2TP-201ENST00000451162 947 ntBASIC6.62□□□□□ -1.35
BRCA1P38398 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC6.62□□□□□ -1.35
BRCA1P38398 TRBV5-2-201ENST00000489095 273 ntBASIC6.62□□□□□ -1.35
BRCA1P38398 RN7SKP253-201ENST00000516424 309 ntBASIC6.62□□□□□ -1.35
BRCA1P38398 SCARNA16.4-201ENST00000516956 187 ntBASIC6.62□□□□□ -1.35
BRCA1P38398 AL133166.1-205ENST00000548306 569 ntTSL 4 BASIC6.62□□□□□ -1.35
BRCA1P38398 AC105411.1-203ENST00000568819 601 ntTSL 5 BASIC6.62□□□□□ -1.35
BRCA1P38398 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC6.62□□□□□ -1.35
BRCA1P38398 AC099494.2-201ENST00000623371 978 ntBASIC6.62□□□□□ -1.35
BRCA1P38398 FBXW7-203ENST00000296555 3572 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
BRCA1P38398 ZNF33B-201ENST00000359467 5958 ntAPPRIS P2 TSL 1 (best) BASIC6.62□□□□□ -1.35
BRCA1P38398 RIMS1-219ENST00000523963 3097 ntTSL 2 BASIC6.61□□□□□ -1.35
BRCA1P38398 TNKS-206ENST00000518281 3897 ntTSL 2 BASIC6.61□□□□□ -1.35
BRCA1P38398 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC6.61□□□□□ -1.35
BRCA1P38398 TSHZ2-202ENST00000371497 12187 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
BRCA1P38398 LINC01776-201ENST00000418344 2229 ntTSL 2 BASIC6.61□□□□□ -1.35
BRCA1P38398 SLC14A1-201ENST00000321925 3971 ntAPPRIS P3 TSL 1 (best) BASIC6.61□□□□□ -1.35
BRCA1P38398 NFIA-201ENST00000357977 3200 ntTSL 2 BASIC6.61□□□□□ -1.35
BRCA1P38398 CNTN5-202ENST00000418526 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC6.61□□□□□ -1.35
BRCA1P38398 NRCAM-203ENST00000379024 5782 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
BRCA1P38398 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC6.61□□□□□ -1.35
BRCA1P38398 HDAC9-202ENST00000405010 4239 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
BRCA1P38398 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
BRCA1P38398 RNA5SP479-201ENST00000364858 117 ntBASIC6.61□□□□□ -1.35
BRCA1P38398 SMIM2-IT1-201ENST00000415082 478 ntTSL 3 BASIC6.61□□□□□ -1.35
BRCA1P38398 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC6.61□□□□□ -1.35
BRCA1P38398 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC6.61□□□□□ -1.35
BRCA1P38398 MEMO1P4-201ENST00000453590 386 ntBASIC6.61□□□□□ -1.35
BRCA1P38398 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC6.61□□□□□ -1.35
BRCA1P38398 AC087190.2-201ENST00000565648 731 ntTSL 3 BASIC6.61□□□□□ -1.35
BRCA1P38398 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC6.61□□□□□ -1.35
BRCA1P38398 RNF138P2-201ENST00000603490 592 ntBASIC6.61□□□□□ -1.35
BRCA1P38398 AC009597.2-201ENST00000604659 592 ntBASIC6.61□□□□□ -1.35
BRCA1P38398 NANOGP3-201ENST00000605855 286 ntBASIC6.61□□□□□ -1.35
BRCA1P38398 AC245389.2-201ENST00000616023 576 ntBASIC6.61□□□□□ -1.35
BRCA1P38398 AP003789.1-201ENST00000617737 605 ntBASIC6.61□□□□□ -1.35
BRCA1P38398 AC242843.1-201ENST00000618702 573 ntBASIC6.61□□□□□ -1.35
BRCA1P38398 CFLAR-201ENST00000309955 14672 ntAPPRIS P3 TSL 1 (best) BASIC6.61□□□□□ -1.35
BRCA1P38398 BZW1-203ENST00000409600 6875 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
BRCA1P38398 CLCC1-204ENST00000369968 4151 ntTSL 5 BASIC6.61□□□□□ -1.35
BRCA1P38398 ATOX1-203ENST00000521264 4341 ntTSL 2 BASIC6.61□□□□□ -1.35
BRCA1P38398 USP37-205ENST00000454775 5019 ntAPPRIS P1 TSL 2 BASIC6.61□□□□□ -1.35
BRCA1P38398 MYO6-202ENST00000369977 5597 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
BRCA1P38398 DSCAM-203ENST00000617870 6176 ntTSL 5 BASIC6.61□□□□□ -1.35
BRCA1P38398 ERLIN2-201ENST00000276461 6073 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
BRCA1P38398 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC6.6□□□□□ -1.35
BRCA1P38398 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC6.6□□□□□ -1.35
BRCA1P38398 RNA5-8SP5-201ENST00000365304 152 ntBASIC6.6□□□□□ -1.35
BRCA1P38398 SNORA62-201ENST00000365493 153 ntBASIC6.6□□□□□ -1.35
BRCA1P38398 GLULP6-201ENST00000399502 913 ntBASIC6.6□□□□□ -1.35
BRCA1P38398 AC069213.2-201ENST00000420238 366 ntBASIC6.6□□□□□ -1.35
BRCA1P38398 AC011742.2-201ENST00000443818 352 ntBASIC6.6□□□□□ -1.35
BRCA1P38398 KNOP1P3-201ENST00000446933 426 ntBASIC6.6□□□□□ -1.35
BRCA1P38398 F11-AS1-201ENST00000505103 1178 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
BRCA1P38398 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC6.6□□□□□ -1.35
BRCA1P38398 AC136624.4-201ENST00000573044 370 ntBASIC6.6□□□□□ -1.35
BRCA1P38398 RN7SL356P-201ENST00000582228 248 ntBASIC6.6□□□□□ -1.35
BRCA1P38398 AP005432.2-201ENST00000608162 586 ntBASIC6.6□□□□□ -1.35
BRCA1P38398 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC6.6□□□□□ -1.35
BRCA1P38398 TNRC6A-202ENST00000395799 8438 ntAPPRIS P3 TSL 5 BASIC6.6□□□□□ -1.35
BRCA1P38398 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC6.6□□□□□ -1.35
BRCA1P38398 ALB-219ENST00000621085 1418 ntTSL 5 BASIC6.6□□□□□ -1.35
BRCA1P38398 KIAA2012-204ENST00000498697 3772 ntAPPRIS ALT2 TSL 5 BASIC6.6□□□□□ -1.35
BRCA1P38398 AC022819.1-201ENST00000563495 3910 ntBASIC6.6□□□□□ -1.35
BRCA1P38398 CEACAM5-202ENST00000398599 2451 ntAPPRIS ALT2 TSL 5 BASIC6.6□□□□□ -1.35
BRCA1P38398 NDST4-204ENST00000613194 3439 ntTSL 5 BASIC6.6□□□□□ -1.35
BRCA1P38398 OR2T7-201ENST00000641057 3463 ntAPPRIS P1 BASIC6.6□□□□□ -1.35
BRCA1P38398 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
BRCA1P38398 RNF4-214ENST00000511600 4123 ntAPPRIS P1 TSL 2 BASIC6.6□□□□□ -1.35
BRCA1P38398 EYA4-206ENST00000431403 2154 ntTSL 5 BASIC6.6□□□□□ -1.35
BRCA1P38398 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
BRCA1P38398 ATXN3-216ENST00000545170 6950 ntTSL 5 BASIC6.6□□□□□ -1.35
BRCA1P38398 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC6.6□□□□□ -1.35
BRCA1P38398 GABRQ-201ENST00000598523 6172 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
BRCA1P38398 AC119751.6-201ENST00000416712 186 ntBASIC6.6□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 96.8 ms