Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AC068775.1-202ENST00000538173 1602 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
HLA-DMBP28068 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
HLA-DMBP28068 AL603750.1-201ENST00000624216 1717 ntBASIC4.34□□□□□ -1.71
HLA-DMBP28068 HSPA8P14-201ENST00000552265 1805 ntBASIC4.34□□□□□ -1.71
HLA-DMBP28068 CTDSPL2-204ENST00000558966 1895 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
HLA-DMBP28068 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC4.34□□□□□ -1.72
HLA-DMBP28068 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC4.34□□□□□ -1.72
HLA-DMBP28068 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
HLA-DMBP28068 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC4.34□□□□□ -1.72
HLA-DMBP28068 AL360270.2-201ENST00000562952 5985 ntBASIC4.34□□□□□ -1.72
HLA-DMBP28068 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
HLA-DMBP28068 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
HLA-DMBP28068 CCDC178-202ENST00000383096 3391 ntAPPRIS ALT2 TSL 5 BASIC4.33□□□□□ -1.72
HLA-DMBP28068 ADAM20-201ENST00000256389 2795 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
HLA-DMBP28068 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC4.33□□□□□ -1.72
HLA-DMBP28068 RAP1GDS1-202ENST00000339360 2092 ntAPPRIS ALT1 TSL 1 (best) BASIC4.33□□□□□ -1.72
HLA-DMBP28068 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC4.33□□□□□ -1.72
HLA-DMBP28068 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC4.33□□□□□ -1.72
HLA-DMBP28068 ZEB1-201ENST00000320985 5423 ntAPPRIS P3 TSL 1 (best) BASIC4.33□□□□□ -1.72
HLA-DMBP28068 C17orf78-203ENST00000611038 1675 ntAPPRIS ALT2 TSL 2 BASIC4.33□□□□□ -1.72
HLA-DMBP28068 XKRY2-202ENST00000623874 1581 ntBASIC4.33□□□□□ -1.72
HLA-DMBP28068 XKRY-202ENST00000624960 1581 ntBASIC4.33□□□□□ -1.72
HLA-DMBP28068 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
HLA-DMBP28068 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
HLA-DMBP28068 TMSB4XP2-201ENST00000335179 210 ntBASIC4.33□□□□□ -1.72
HLA-DMBP28068 OR7E25P-201ENST00000344844 931 ntBASIC4.33□□□□□ -1.72
HLA-DMBP28068 RNA5SP477-201ENST00000362639 119 ntBASIC4.33□□□□□ -1.72
HLA-DMBP28068 RN7SKP185-201ENST00000362813 326 ntBASIC4.33□□□□□ -1.72
HLA-DMBP28068 RNU1-136P-201ENST00000384181 164 ntBASIC4.33□□□□□ -1.72
HLA-DMBP28068 MIR130A-201ENST00000385274 89 ntBASIC4.33□□□□□ -1.72
HLA-DMBP28068 TRAV10-201ENST00000390432 379 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
HLA-DMBP28068 TRAV8-7-201ENST00000390456 341 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
HLA-DMBP28068 SLC20A1P1-201ENST00000413906 956 ntBASIC4.33□□□□□ -1.72
HLA-DMBP28068 AL121878.1-201ENST00000418638 859 ntBASIC4.33□□□□□ -1.72
HLA-DMBP28068 HAO2-IT1-201ENST00000419144 311 ntTSL 5 BASIC4.33□□□□□ -1.72
HLA-DMBP28068 AL136131.2-201ENST00000424283 348 ntTSL 3 BASIC4.33□□□□□ -1.72
HLA-DMBP28068 RPS29P14-201ENST00000431518 171 ntBASIC4.33□□□□□ -1.72
HLA-DMBP28068 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC4.33□□□□□ -1.72
HLA-DMBP28068 MEMO1P4-201ENST00000453590 386 ntBASIC4.33□□□□□ -1.72
HLA-DMBP28068 GEMIN2P1-201ENST00000454246 752 ntBASIC4.33□□□□□ -1.72
HLA-DMBP28068 AC084754.1-201ENST00000463466 464 ntBASIC4.33□□□□□ -1.72
HLA-DMBP28068 RPS7P6-201ENST00000485777 579 ntBASIC4.33□□□□□ -1.72
HLA-DMBP28068 AC092916.1-201ENST00000497896 411 ntTSL 3 BASIC4.33□□□□□ -1.72
HLA-DMBP28068 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC4.33□□□□□ -1.72
HLA-DMBP28068 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC4.33□□□□□ -1.72
HLA-DMBP28068 SETP21-201ENST00000514799 892 ntBASIC4.33□□□□□ -1.72
HLA-DMBP28068 AC011632.2-201ENST00000520696 738 ntTSL 3 BASIC4.33□□□□□ -1.72
HLA-DMBP28068 CETN3-206ENST00000522864 738 ntTSL 3 BASIC4.33□□□□□ -1.72
HLA-DMBP28068 WBP1LP3-201ENST00000523033 208 ntBASIC4.33□□□□□ -1.72
HLA-DMBP28068 AP000424.2-201ENST00000523784 233 ntTSL 3 BASIC4.33□□□□□ -1.72
HLA-DMBP28068 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC4.33□□□□□ -1.72
HLA-DMBP28068 OR4A43P-201ENST00000532938 908 ntBASIC4.33□□□□□ -1.72
HLA-DMBP28068 AC137627.1-201ENST00000545761 289 ntBASIC4.33□□□□□ -1.72
HLA-DMBP28068 FLVCR2-207ENST00000555027 938 ntTSL 3 BASIC4.33□□□□□ -1.72
HLA-DMBP28068 AC006530.1-201ENST00000555980 571 ntBASIC4.33□□□□□ -1.72
HLA-DMBP28068 AC130371.1-201ENST00000577023 230 ntTSL 5 BASIC4.33□□□□□ -1.72
HLA-DMBP28068 AC005244.1-201ENST00000582566 339 ntBASIC4.33□□□□□ -1.72
HLA-DMBP28068 PIK3C3-207ENST00000587402 452 ntTSL 3 BASIC4.33□□□□□ -1.72
HLA-DMBP28068 AC100775.1-201ENST00000590942 522 ntTSL 3 BASIC4.33□□□□□ -1.72
HLA-DMBP28068 AC008521.2-201ENST00000591021 259 ntBASIC4.33□□□□□ -1.72
HLA-DMBP28068 AC108673.3-201ENST00000609183 335 ntBASIC4.33□□□□□ -1.72
HLA-DMBP28068 SSX4B-202ENST00000619890 1092 ntTSL 5 BASIC4.33□□□□□ -1.72
HLA-DMBP28068 SSX4-202ENST00000620320 1092 ntTSL 5 BASIC4.33□□□□□ -1.72
HLA-DMBP28068 AC138965.3-201ENST00000623875 498 ntBASIC4.33□□□□□ -1.72
HLA-DMBP28068 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC4.33□□□□□ -1.72
HLA-DMBP28068 RBMS3-AS2-206ENST00000629296 438 ntTSL 5 BASIC4.33□□□□□ -1.72
HLA-DMBP28068 AC129915.3-201ENST00000634128 948 ntBASIC4.33□□□□□ -1.72
HLA-DMBP28068 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC4.33□□□□□ -1.72
HLA-DMBP28068 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC4.33□□□□□ -1.72
HLA-DMBP28068 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
HLA-DMBP28068 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
HLA-DMBP28068 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
HLA-DMBP28068 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
HLA-DMBP28068 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
HLA-DMBP28068 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC4.33□□□□□ -1.72
HLA-DMBP28068 AC093849.1-201ENST00000563631 2209 ntBASIC4.33□□□□□ -1.72
HLA-DMBP28068 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
HLA-DMBP28068 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
HLA-DMBP28068 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC4.33□□□□□ -1.72
HLA-DMBP28068 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
HLA-DMBP28068 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC4.33□□□□□ -1.72
HLA-DMBP28068 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
HLA-DMBP28068 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
HLA-DMBP28068 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC4.32□□□□□ -1.72
HLA-DMBP28068 ALB-202ENST00000401494 1659 ntTSL 5 BASIC4.32□□□□□ -1.72
HLA-DMBP28068 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
HLA-DMBP28068 ABCC13-202ENST00000463099 3842 ntBASIC4.32□□□□□ -1.72
HLA-DMBP28068 AC012078.1-201ENST00000405035 1646 ntBASIC4.32□□□□□ -1.72
HLA-DMBP28068 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
HLA-DMBP28068 C3orf35-203ENST00000425564 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
HLA-DMBP28068 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
HLA-DMBP28068 AC133552.1-201ENST00000569988 4007 ntBASIC4.32□□□□□ -1.72
HLA-DMBP28068 AC117409.1-201ENST00000470499 1310 ntBASIC4.32□□□□□ -1.72
HLA-DMBP28068 FAM162A-201ENST00000232125 801 ntTSL 2 BASIC4.32□□□□□ -1.72
HLA-DMBP28068 SCGB3A2-201ENST00000296694 515 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
HLA-DMBP28068 ANAPC10-201ENST00000309439 868 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
HLA-DMBP28068 RN7SKP69-201ENST00000365390 305 ntBASIC4.32□□□□□ -1.72
HLA-DMBP28068 RN7SKP269-201ENST00000365545 319 ntBASIC4.32□□□□□ -1.72
HLA-DMBP28068 IGLV3-10-201ENST00000390315 382 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
HLA-DMBP28068 EI24P3-201ENST00000399046 1062 ntBASIC4.32□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 167.8 ms