Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AC113349.1-201ENST00000512105 583 ntTSL 4 BASIC5.66□□□□□ -1.5
CCDC3Q9BQI4 RN7SKP5-201ENST00000517045 272 ntBASIC5.66□□□□□ -1.5
CCDC3Q9BQI4 LDHC-205ENST00000537486 583 ntTSL 5 BASIC5.66□□□□□ -1.5
CCDC3Q9BQI4 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC5.66□□□□□ -1.5
CCDC3Q9BQI4 LINC02168-201ENST00000565327 352 ntTSL 2 BASIC5.66□□□□□ -1.5
CCDC3Q9BQI4 AC022916.4-201ENST00000585646 475 ntTSL 3 BASIC5.66□□□□□ -1.5
CCDC3Q9BQI4 AC105094.2-202ENST00000590968 566 ntTSL 2 BASIC5.66□□□□□ -1.5
CCDC3Q9BQI4 SUMO2P15-201ENST00000604285 278 ntBASIC5.66□□□□□ -1.5
CCDC3Q9BQI4 AL353729.2-201ENST00000605859 1249 ntBASIC5.66□□□□□ -1.5
CCDC3Q9BQI4 MIR4435-2HG-220ENST00000609902 603 ntTSL 3 BASIC5.66□□□□□ -1.5
CCDC3Q9BQI4 AL035661.1-201ENST00000620459 1144 ntBASIC5.66□□□□□ -1.5
CCDC3Q9BQI4 AC020763.5-201ENST00000623298 430 ntBASIC5.66□□□□□ -1.5
CCDC3Q9BQI4 CU639417.4-201ENST00000623928 207 ntBASIC5.66□□□□□ -1.5
CCDC3Q9BQI4 AC022919.1-201ENST00000624979 626 ntBASIC5.66□□□□□ -1.5
CCDC3Q9BQI4 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC3Q9BQI4 ZNF337-AS1-201ENST00000414393 4666 ntTSL 2 BASIC5.66□□□□□ -1.5
CCDC3Q9BQI4 CDKAL1-202ENST00000378610 3115 ntAPPRIS P1 TSL 2 BASIC5.66□□□□□ -1.5
CCDC3Q9BQI4 AC140479.2-201ENST00000421567 3130 ntBASIC5.66□□□□□ -1.5
CCDC3Q9BQI4 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC5.66□□□□□ -1.5
CCDC3Q9BQI4 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC3Q9BQI4 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC3Q9BQI4 AC083843.2-201ENST00000568248 6253 ntBASIC5.66□□□□□ -1.5
CCDC3Q9BQI4 SLC39A12-201ENST00000377369 2808 ntAPPRIS ALT1 TSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC3Q9BQI4 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
CCDC3Q9BQI4 AL121839.2-201ENST00000565058 6943 ntBASIC5.65□□□□□ -1.5
CCDC3Q9BQI4 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.5
CCDC3Q9BQI4 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
CCDC3Q9BQI4 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
CCDC3Q9BQI4 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
CCDC3Q9BQI4 LRRC37A3-202ENST00000334962 2654 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
CCDC3Q9BQI4 PLEKHA1-201ENST00000368988 3872 ntTSL 5 BASIC5.65□□□□□ -1.5
CCDC3Q9BQI4 ANGPT1-205ENST00000520052 1523 ntTSL 5 BASIC5.65□□□□□ -1.5
CCDC3Q9BQI4 CD200R1L-204ENST00000488794 1597 ntAPPRIS ALT2 TSL 5 BASIC5.65□□□□□ -1.5
CCDC3Q9BQI4 BCORP1-203ENST00000513194 5093 ntBASIC5.65□□□□□ -1.5
CCDC3Q9BQI4 ADAM29-202ENST00000404450 3171 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
CCDC3Q9BQI4 AC021092.1-201ENST00000592946 3199 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
CCDC3Q9BQI4 RN7SKP162-201ENST00000363605 345 ntBASIC5.65□□□□□ -1.5
CCDC3Q9BQI4 RN7SKP124-201ENST00000364730 341 ntBASIC5.65□□□□□ -1.5
CCDC3Q9BQI4 RNA5-8SP5-201ENST00000365304 152 ntBASIC5.65□□□□□ -1.5
CCDC3Q9BQI4 TYRP1-201ENST00000381136 872 ntTSL 2 BASIC5.65□□□□□ -1.5
CCDC3Q9BQI4 LYST-AS1-201ENST00000412098 521 ntTSL 3 BASIC5.65□□□□□ -1.5
CCDC3Q9BQI4 NPM1P4-201ENST00000414095 812 ntBASIC5.65□□□□□ -1.5
CCDC3Q9BQI4 OR6E1P-201ENST00000414424 923 ntBASIC5.65□□□□□ -1.5
CCDC3Q9BQI4 MTND4LP17-201ENST00000414607 293 ntBASIC5.65□□□□□ -1.5
CCDC3Q9BQI4 AL596448.1-201ENST00000415024 392 ntBASIC5.65□□□□□ -1.5
CCDC3Q9BQI4 EEF1A1P29-201ENST00000416082 1096 ntBASIC5.65□□□□□ -1.5
CCDC3Q9BQI4 SETP9-201ENST00000423837 832 ntBASIC5.65□□□□□ -1.5
CCDC3Q9BQI4 AC097523.2-201ENST00000435551 652 ntBASIC5.65□□□□□ -1.5
CCDC3Q9BQI4 AC023141.8-201ENST00000442554 208 ntBASIC5.65□□□□□ -1.5
CCDC3Q9BQI4 OSBPL10-AS1-205ENST00000444503 526 ntTSL 4 BASIC5.65□□□□□ -1.5
CCDC3Q9BQI4 AL163193.1-201ENST00000444895 788 ntBASIC5.65□□□□□ -1.5
CCDC3Q9BQI4 RSL24D1P2-201ENST00000445584 366 ntBASIC5.65□□□□□ -1.5
CCDC3Q9BQI4 RNU1-88P-201ENST00000459274 128 ntBASIC5.65□□□□□ -1.5
CCDC3Q9BQI4 RN7SL72P-201ENST00000460697 269 ntBASIC5.65□□□□□ -1.5
CCDC3Q9BQI4 AL603882.1-201ENST00000463059 681 ntBASIC5.65□□□□□ -1.5
CCDC3Q9BQI4 MTND3P6-201ENST00000485242 339 ntBASIC5.65□□□□□ -1.5
CCDC3Q9BQI4 NECTIN3-AS1-205ENST00000491709 792 ntTSL 3 BASIC5.65□□□□□ -1.5
CCDC3Q9BQI4 AC108693.1-201ENST00000496068 432 ntBASIC5.65□□□□□ -1.5
CCDC3Q9BQI4 AC010387.1-201ENST00000507526 487 ntTSL 2 BASIC5.65□□□□□ -1.5
CCDC3Q9BQI4 LINC02505-202ENST00000510597 776 ntTSL 3 BASIC5.65□□□□□ -1.5
CCDC3Q9BQI4 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC5.65□□□□□ -1.5
CCDC3Q9BQI4 SNORA48.9-201ENST00000516419 162 ntBASIC5.65□□□□□ -1.5
CCDC3Q9BQI4 SCARNA6.1-201ENST00000516989 238 ntBASIC5.65□□□□□ -1.5
CCDC3Q9BQI4 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC5.65□□□□□ -1.5
CCDC3Q9BQI4 AC027026.1-201ENST00000532323 742 ntBASIC5.65□□□□□ -1.5
CCDC3Q9BQI4 VPS29-210ENST00000552130 1057 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
CCDC3Q9BQI4 AC026992.1-201ENST00000558269 571 ntTSL 2 BASIC5.65□□□□□ -1.5
CCDC3Q9BQI4 BLOC1S6-209ENST00000565409 616 ntTSL 4 BASIC5.65□□□□□ -1.5
CCDC3Q9BQI4 ANKRD20A5P-203ENST00000580200 566 ntTSL 5 BASIC5.65□□□□□ -1.5
CCDC3Q9BQI4 AC107993.1-201ENST00000591343 684 ntBASIC5.65□□□□□ -1.5
CCDC3Q9BQI4 AC016911.1-201ENST00000613297 452 ntBASIC5.65□□□□□ -1.5
CCDC3Q9BQI4 AC008115.3-201ENST00000614874 549 ntBASIC5.65□□□□□ -1.5
CCDC3Q9BQI4 AC069234.4-201ENST00000621276 412 ntBASIC5.65□□□□□ -1.5
CCDC3Q9BQI4 AL137789.1-204ENST00000623503 666 ntTSL 5 BASIC5.65□□□□□ -1.5
CCDC3Q9BQI4 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.51
CCDC3Q9BQI4 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC5.65□□□□□ -1.51
CCDC3Q9BQI4 SLC38A1-211ENST00000612161 1607 ntTSL 5 BASIC5.65□□□□□ -1.51
CCDC3Q9BQI4 VEZT-204ENST00000436874 4562 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
CCDC3Q9BQI4 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.51
CCDC3Q9BQI4 LINC01787-201ENST00000435311 1994 ntTSL 2 BASIC5.65□□□□□ -1.51
CCDC3Q9BQI4 NBPF26-201ENST00000609741 3671 ntTSL 5 BASIC5.65□□□□□ -1.51
CCDC3Q9BQI4 RALYL-211ENST00000523850 1684 ntTSL 2 BASIC5.65□□□□□ -1.51
CCDC3Q9BQI4 MPP5-204ENST00000555925 5006 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
CCDC3Q9BQI4 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
CCDC3Q9BQI4 RAB30-216ENST00000612684 9783 ntAPPRIS P1 TSL 3 BASIC5.65□□□□□ -1.51
CCDC3Q9BQI4 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
CCDC3Q9BQI4 AC114876.1-201ENST00000490962 1366 ntBASIC5.65□□□□□ -1.51
CCDC3Q9BQI4 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
CCDC3Q9BQI4 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.51
CCDC3Q9BQI4 CACNB4-203ENST00000397327 2112 ntTSL 5 BASIC5.65□□□□□ -1.51
CCDC3Q9BQI4 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
CCDC3Q9BQI4 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC5.65□□□□□ -1.51
CCDC3Q9BQI4 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC3Q9BQI4 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC3Q9BQI4 KCNMB2-210ENST00000617329 2214 ntTSL 2 BASIC5.64□□□□□ -1.51
CCDC3Q9BQI4 C5orf64-203ENST00000505642 2970 ntTSL 2 BASIC5.64□□□□□ -1.51
CCDC3Q9BQI4 AC005725.1-201ENST00000577346 2607 ntBASIC5.64□□□□□ -1.51
CCDC3Q9BQI4 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC5.64□□□□□ -1.51
CCDC3Q9BQI4 PCAT19-201ENST00000588495 3472 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC3Q9BQI4 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 87.2 ms