Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 TRIM53CP-201ENST00000531490 1354 ntBASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 RAB2B-201ENST00000397762 2928 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 NUP93-202ENST00000542526 8257 ntTSL 2 BASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 NSF-206ENST00000575068 2667 ntTSL 2 BASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 TBC1D23-205ENST00000475134 2074 ntTSL 5 BASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 CYP2C18-201ENST00000285979 2418 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 CREM-216ENST00000429130 1476 ntTSL 5 BASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 AC016831.1-201ENST00000432045 6411 ntTSL 2 BASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 NOX1-204ENST00000372966 2529 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 LRRTM4-205ENST00000409911 2976 ntAPPRIS ALT1 TSL 5 BASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
TRAIPQ9BWF2 CTAGE11P-201ENST00000451540 2353 ntBASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 ANO4-201ENST00000392977 3509 ntAPPRIS ALT2 TSL 2 BASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 AL591379.1-201ENST00000315293 3739 ntTSL 2 BASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 AC091806.1-201ENST00000452690 3000 ntTSL 2 BASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 PSG9-206ENST00000593948 1429 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 CDC40-203ENST00000368932 3933 ntAPPRIS P1 TSL 5 BASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 RPTN-201ENST00000316073 3569 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 LMO7-205ENST00000377534 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 PDE4B-206ENST00000423207 4546 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 UTP14C-201ENST00000521776 5529 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 VPS13A-202ENST00000357409 9967 ntAPPRIS ALT2 TSL 1 (best) BASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 CLCN5-201ENST00000307367 3177 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 BVES-AS1-202ENST00000369122 1716 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 LDB2-216ENST00000515064 2295 ntAPPRIS ALT1 TSL 2 BASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 OR1A1-201ENST00000304094 930 ntAPPRIS P1 BASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 RNU6-839P-201ENST00000363347 108 ntBASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 RNU6-619P-201ENST00000365146 108 ntBASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 C2orf88-202ENST00000396974 998 ntAPPRIS P1 TSL 2 BASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 AL161909.1-201ENST00000397390 712 ntBASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 GSTM3P2-201ENST00000412746 530 ntBASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 LINC00463-201ENST00000413501 1147 ntTSL 3 BASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 RBMS3-AS1-201ENST00000414547 554 ntTSL 4 BASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 DYNLL1P7-201ENST00000429273 258 ntBASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 AC018467.1-202ENST00000432612 533 ntTSL 3 BASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 AL139161.2-201ENST00000438371 740 ntTSL 3 BASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 FHP1-201ENST00000442741 703 ntBASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 AC060834.2-201ENST00000447999 618 ntTSL 3 BASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 ST13P21-201ENST00000453250 1098 ntBASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 SNORA81.1-201ENST00000458922 177 ntBASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 TFP1-201ENST00000460564 572 ntTSL 4 BASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 RPS4XP17-201ENST00000479057 754 ntBASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 TFP1-203ENST00000490470 561 ntTSL 4 BASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 SETP14-201ENST00000497538 873 ntBASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 AC006487.2-201ENST00000503624 577 ntTSL 4 BASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 AC104090.1-201ENST00000506341 1171 ntBASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 RNA5SP135-201ENST00000517019 125 ntBASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 TATDN1-202ENST00000517678 815 ntTSL 3 BASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 IGHVIII-26-1-201ENST00000520387 250 ntBASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 MTCO1P49-201ENST00000523429 802 ntBASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 RGS5-220ENST00000528689 566 ntTSL 5 BASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 RAB30-209ENST00000532548 644 ntTSL 3 BASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 AL136018.1-202ENST00000555300 488 ntTSL 5 BASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 AL096869.1-201ENST00000557622 559 ntTSL 4 BASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 AC116903.1-201ENST00000557683 539 ntTSL 4 BASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 ISCA1P3-201ENST00000577104 373 ntBASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 AC015801.1-201ENST00000585651 153 ntBASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 AC023813.4-201ENST00000607580 580 ntBASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 LINC02019-202ENST00000609204 845 ntTSL 2 BASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 AC122108.2-201ENST00000611946 526 ntBASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 AL121809.2-201ENST00000613169 341 ntBASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 AL161420.1-201ENST00000619393 264 ntBASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 AC124312.6-202ENST00000623624 418 ntBASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 LINC01440-208ENST00000627300 699 ntTSL 5 BASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 LINC00251-201ENST00000627569 1055 ntTSL 3 BASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 KIAA1549L-201ENST00000265654 4492 ntAPPRIS ALT2 TSL 2 BASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 PLA2R1-201ENST00000283243 14371 ntAPPRIS P3 TSL 1 (best) BASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 EHBP1-203ENST00000405289 3591 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 HEPH-202ENST00000343002 4854 ntAPPRIS ALT2 TSL 1 (best) BASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 AL356361.1-201ENST00000400943 1459 ntBASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 AL034417.4-202ENST00000642135 2236 ntBASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 FCRL2-203ENST00000368181 1669 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 KIF11-201ENST00000260731 4860 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 DBF4P1-201ENST00000412976 1892 ntBASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 PDZK1P1-201ENST00000401008 3498 ntTSL 2 BASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 PSD3-220ENST00000615573 5843 ntTSL 5 BASIC7.79□□□□□ -1.16
TRAIPQ9BWF2 BDNF-209ENST00000420794 4176 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
TRAIPQ9BWF2 LGALS8-204ENST00000352231 1402 ntAPPRIS P4 TSL 2 BASIC7.78□□□□□ -1.16
TRAIPQ9BWF2 AC021755.1-201ENST00000559747 1447 ntBASIC7.78□□□□□ -1.16
TRAIPQ9BWF2 CBR4-201ENST00000306193 3443 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
TRAIPQ9BWF2 GPR89A-203ENST00000462900 1527 ntTSL 2 BASIC7.78□□□□□ -1.16
TRAIPQ9BWF2 CDC40-201ENST00000307731 3848 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
TRAIPQ9BWF2 SLC36A4-206ENST00000529184 1917 ntTSL 2 BASIC7.78□□□□□ -1.16
TRAIPQ9BWF2 VPS53-204ENST00000437048 13106 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
TRAIPQ9BWF2 NOVA1-204ENST00000465357 3573 ntAPPRIS ALT1 TSL 3 BASIC7.78□□□□□ -1.16
TRAIPQ9BWF2 COLCA1-205ENST00000620864 8098 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
TRAIPQ9BWF2 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
TRAIPQ9BWF2 RN7SKP107-201ENST00000364157 290 ntBASIC7.78□□□□□ -1.16
TRAIPQ9BWF2 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC7.78□□□□□ -1.16
TRAIPQ9BWF2 MIR4435-2HG-203ENST00000409569 514 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
TRAIPQ9BWF2 AL359378.2-201ENST00000415575 746 ntTSL 2 BASIC7.78□□□□□ -1.16
TRAIPQ9BWF2 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
TRAIPQ9BWF2 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC7.78□□□□□ -1.16
TRAIPQ9BWF2 OFD1P2Y-201ENST00000421895 1149 ntBASIC7.78□□□□□ -1.16
TRAIPQ9BWF2 GAPDHP57-201ENST00000424400 585 ntBASIC7.78□□□□□ -1.16
TRAIPQ9BWF2 LINC00595-203ENST00000432742 683 ntTSL 3 BASIC7.78□□□□□ -1.16
Retrieved 100 of 98,524 protein–RNA pairs in 131.2 ms