Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 AC026634.1-201ENST00000634369 198 ntBASIC5.81□□□□□ -1.48
CCDC140Q96MF4 AJ009632.2-209ENST00000634853 933 ntTSL 5 BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 MBD5-221ENST00000637159 902 ntTSL 5 BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 FAM13A-218ENST00000511976 3579 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 CYP3A7-CYP3A51P-202ENST00000620220 1704 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 Z96074.1-203ENST00000637685 1746 ntTSL 5 BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 NDC80-201ENST00000261597 2172 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 AGXT2-206ENST00000618015 2181 ntTSL 5 BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 AKAP5-201ENST00000320636 2601 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 BRS3-201ENST00000370648 2833 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 ZNF397-202ENST00000330501 5251 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 PDZK1P1-201ENST00000401008 3498 ntTSL 2 BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 DLG2-211ENST00000426717 5927 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 UGT2B11-201ENST00000446444 2088 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 OPRM1-205ENST00000414028 2485 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 LHX9-201ENST00000367387 7836 ntAPPRIS P3 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 MDM4-204ENST00000367183 9098 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 RUNDC3A-AS1-202ENST00000588097 5203 ntTSL 5 BASIC5.81□□□□□ -1.48
CCDC140Q96MF4 MAPK10-242ENST00000639242 3088 ntAPPRIS P2 TSL 5 BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 EEF1A1P20-201ENST00000514852 1386 ntBASIC5.8□□□□□ -1.48
CCDC140Q96MF4 CCR3-202ENST00000395940 1581 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 CD86-209ENST00000493101 1572 ntTSL 2 BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 OXCT1-206ENST00000512084 1593 ntTSL 2 BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 AC009948.3-201ENST00000603415 1798 ntBASIC5.8□□□□□ -1.48
CCDC140Q96MF4 KIF11-201ENST00000260731 4860 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 LINC00269-201ENST00000399711 2173 ntTSL 2 BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 SLC16A4-203ENST00000437429 2372 ntTSL 2 BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 PTPN3-203ENST00000412145 8765 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 MFSD6-201ENST00000281416 4608 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 RBM11-201ENST00000400577 1934 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 FRMD7-203ENST00000464296 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 MRE11P1-201ENST00000464884 2127 ntBASIC5.8□□□□□ -1.48
CCDC140Q96MF4 PDE4B-206ENST00000423207 4546 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 THADA-204ENST00000403856 6939 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 DAZ3-201ENST00000315357 3277 ntAPPRIS ALT2 TSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 DAZ2-201ENST00000382294 3277 ntAPPRIS ALT2 TSL 5 BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 DAZ4-204ENST00000415508 3277 ntTSL 5 BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 HHLA2-201ENST00000357759 2666 ntAPPRIS P3 TSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 PAH-201ENST00000307000 2466 ntTSL 5 BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 TMBIM6-209ENST00000547798 2494 ntAPPRIS ALT2 TSL 2 BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 SLC26A5-206ENST00000393727 2270 ntAPPRIS ALT1 TSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 MGAT4A-202ENST00000393487 8382 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 AC016716.1-201ENST00000265882 708 ntBASIC5.8□□□□□ -1.48
CCDC140Q96MF4 DAOA-202ENST00000375936 742 ntAPPRIS P3 TSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 SSX6-201ENST00000376932 562 ntBASIC5.8□□□□□ -1.48
CCDC140Q96MF4 OR51B6-201ENST00000380219 939 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 SNORA68-201ENST00000384437 133 ntBASIC5.8□□□□□ -1.48
CCDC140Q96MF4 IYD-205ENST00000392256 882 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 AL050335.1-201ENST00000396909 869 ntBASIC5.8□□□□□ -1.48
CCDC140Q96MF4 SNORA2C-201ENST00000408564 137 ntBASIC5.8□□□□□ -1.48
CCDC140Q96MF4 RN7SKP225-201ENST00000410405 352 ntBASIC5.8□□□□□ -1.48
CCDC140Q96MF4 LINC00993-201ENST00000420453 540 ntBASIC5.8□□□□□ -1.48
CCDC140Q96MF4 AL590714.1-201ENST00000420498 379 ntTSL 3 BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 AC009237.2-201ENST00000421358 284 ntBASIC5.8□□□□□ -1.48
CCDC140Q96MF4 AC009495.3-201ENST00000425688 779 ntTSL 3 BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 AL512649.1-201ENST00000428997 581 ntBASIC5.8□□□□□ -1.48
CCDC140Q96MF4 OR3B1P-201ENST00000437536 893 ntBASIC5.8□□□□□ -1.48
CCDC140Q96MF4 AL159174.1-201ENST00000438267 811 ntTSL 3 BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 LINC00867-203ENST00000445161 580 ntTSL 2 BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 CLDN34-201ENST00000445307 995 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 LRRC28-203ENST00000447360 1235 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 AL161646.1-201ENST00000447860 1013 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 AC093392.2-201ENST00000450682 337 ntBASIC5.8□□□□□ -1.48
CCDC140Q96MF4 IGKV1OR2-2-201ENST00000451163 355 ntBASIC5.8□□□□□ -1.48
CCDC140Q96MF4 PYM1-204ENST00000454792 884 ntTSL 2 BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 OR7E62P-201ENST00000456741 477 ntBASIC5.8□□□□□ -1.48
CCDC140Q96MF4 CXCR6-203ENST00000457814 1184 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 RN7SL392P-201ENST00000473024 299 ntBASIC5.8□□□□□ -1.48
CCDC140Q96MF4 AC015820.1-201ENST00000473882 321 ntBASIC5.8□□□□□ -1.48
CCDC140Q96MF4 AC126182.1-201ENST00000478134 357 ntBASIC5.8□□□□□ -1.48
CCDC140Q96MF4 AC055758.1-201ENST00000494509 569 ntTSL 3 BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 AC018709.1-201ENST00000509111 700 ntAPPRIS P1 TSL 3 BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 AC091819.1-201ENST00000518330 630 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 OSBPL9P2-201ENST00000526582 1228 ntBASIC5.8□□□□□ -1.48
CCDC140Q96MF4 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 EEF1B2P4-201ENST00000551398 348 ntBASIC5.8□□□□□ -1.48
CCDC140Q96MF4 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 RORA-AS2-202ENST00000561413 576 ntTSL 4 BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 AC092720.1-203ENST00000563921 550 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 BMS1P8-201ENST00000565049 1178 ntBASIC5.8□□□□□ -1.48
CCDC140Q96MF4 AC122134.1-201ENST00000565664 1104 ntBASIC5.8□□□□□ -1.48
CCDC140Q96MF4 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 AC090125.1-201ENST00000581541 493 ntTSL 3 BASIC5.8□□□□□ -1.48
CCDC140Q96MF4 RN7SL178P-201ENST00000582930 304 ntBASIC5.8□□□□□ -1.48
CCDC140Q96MF4 AC010761.6-201ENST00000587898 197 ntTSL 3 BASIC5.8□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 78.5 ms