Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 CLVS1-203ENST00000518592 2880 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
COL4A4P53420 HSPD1P7-201ENST00000447985 1686 ntBASIC5.93□□□□□ -1.46
COL4A4P53420 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC5.93□□□□□ -1.46
COL4A4P53420 LINC01450-201ENST00000443406 3263 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
COL4A4P53420 AL158152.1-201ENST00000602652 1435 ntBASIC5.93□□□□□ -1.46
COL4A4P53420 AC011493.1-201ENST00000596753 1632 ntBASIC5.92□□□□□ -1.46
COL4A4P53420 CUL4B-204ENST00000404115 3264 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
COL4A4P53420 CDK19-203ENST00000413605 6007 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
COL4A4P53420 CTNND1-204ENST00000361796 6226 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
COL4A4P53420 DCN-218ENST00000551354 2924 ntTSL 3 BASIC5.92□□□□□ -1.46
COL4A4P53420 RNF212B-201ENST00000399905 1071 ntTSL 5 BASIC5.92□□□□□ -1.46
COL4A4P53420 LINC00342-201ENST00000412393 654 ntTSL 3 BASIC5.92□□□□□ -1.46
COL4A4P53420 AL157938.2-207ENST00000415391 884 ntTSL 2 BASIC5.92□□□□□ -1.46
COL4A4P53420 AK3P5-201ENST00000432033 519 ntBASIC5.92□□□□□ -1.46
COL4A4P53420 LINC00380-201ENST00000442478 353 ntTSL 2 BASIC5.92□□□□□ -1.46
COL4A4P53420 LINC02083-201ENST00000462835 515 ntTSL 3 BASIC5.92□□□□□ -1.46
COL4A4P53420 RPL37AP8-201ENST00000494116 276 ntBASIC5.92□□□□□ -1.46
COL4A4P53420 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC5.92□□□□□ -1.46
COL4A4P53420 SNRPCP2-201ENST00000504370 475 ntBASIC5.92□□□□□ -1.46
COL4A4P53420 AC112693.1-201ENST00000555297 682 ntTSL 3 BASIC5.92□□□□□ -1.46
COL4A4P53420 LINC02345-203ENST00000558897 405 ntTSL 3 BASIC5.92□□□□□ -1.46
COL4A4P53420 CASC22-201ENST00000569713 386 ntTSL 5 BASIC5.92□□□□□ -1.46
COL4A4P53420 DHFRP1-201ENST00000579682 559 ntBASIC5.92□□□□□ -1.46
COL4A4P53420 AC092683.1-203ENST00000594050 654 ntTSL 5 BASIC5.92□□□□□ -1.46
COL4A4P53420 AL133481.2-203ENST00000607558 139 ntBASIC5.92□□□□□ -1.46
COL4A4P53420 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC5.92□□□□□ -1.46
COL4A4P53420 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC5.92□□□□□ -1.46
COL4A4P53420 DTNA-225ENST00000595022 6016 ntAPPRIS ALT2 TSL 1 (best) BASIC5.92□□□□□ -1.46
COL4A4P53420 RPS29-202ENST00000396020 7062 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
COL4A4P53420 DDX4-202ENST00000354991 2324 ntTSL 5 BASIC5.92□□□□□ -1.46
COL4A4P53420 HSPA8P14-201ENST00000552265 1805 ntBASIC5.92□□□□□ -1.46
COL4A4P53420 KIAA0391-209ENST00000604948 1706 ntAPPRIS ALT2 TSL 2 BASIC5.92□□□□□ -1.46
COL4A4P53420 TRIM38-201ENST00000357085 9413 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
COL4A4P53420 OR5B2-202ENST00000641342 2184 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
COL4A4P53420 NCR3LG1-201ENST00000338965 6438 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
COL4A4P53420 KIF20A-201ENST00000394894 3201 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
COL4A4P53420 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
COL4A4P53420 EEF1A1P33-201ENST00000554413 1362 ntBASIC5.91□□□□□ -1.46
COL4A4P53420 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
COL4A4P53420 SNORA67-201ENST00000384423 137 ntBASIC5.91□□□□□ -1.46
COL4A4P53420 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC5.91□□□□□ -1.46
COL4A4P53420 HNRNPA3P4-201ENST00000427514 803 ntBASIC5.91□□□□□ -1.46
COL4A4P53420 AP001604.1-201ENST00000447384 954 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
COL4A4P53420 RPS3AP53-201ENST00000454716 778 ntBASIC5.91□□□□□ -1.46
COL4A4P53420 NDUFAF4P3-201ENST00000456468 525 ntBASIC5.91□□□□□ -1.46
COL4A4P53420 AC021106.1-201ENST00000509020 1058 ntBASIC5.91□□□□□ -1.46
COL4A4P53420 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC5.91□□□□□ -1.46
COL4A4P53420 AC209154.1-201ENST00000582156 337 ntBASIC5.91□□□□□ -1.46
COL4A4P53420 AC009704.2-201ENST00000618739 483 ntBASIC5.91□□□□□ -1.46
COL4A4P53420 AC069542.2-201ENST00000624816 216 ntBASIC5.91□□□□□ -1.46
COL4A4P53420 AC063952.1-204ENST00000635496 927 ntTSL 5 BASIC5.91□□□□□ -1.46
COL4A4P53420 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC5.91□□□□□ -1.46
COL4A4P53420 AC018765.1-201ENST00000623357 3446 ntBASIC5.91□□□□□ -1.46
COL4A4P53420 ATP1B4-203ENST00000539306 4644 ntTSL 2 BASIC5.91□□□□□ -1.46
COL4A4P53420 ALB-220ENST00000621628 1606 ntTSL 5 BASIC5.91□□□□□ -1.46
COL4A4P53420 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
COL4A4P53420 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
COL4A4P53420 C5orf64-203ENST00000505642 2970 ntTSL 2 BASIC5.91□□□□□ -1.46
COL4A4P53420 PSG1-202ENST00000312439 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.91□□□□□ -1.46
COL4A4P53420 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
COL4A4P53420 KYNUP3-201ENST00000574386 1341 ntBASIC5.91□□□□□ -1.46
COL4A4P53420 FYB1-204ENST00000505428 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC5.91□□□□□ -1.46
COL4A4P53420 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
COL4A4P53420 LINC01793-201ENST00000409590 2036 ntTSL 2 BASIC5.91□□□□□ -1.46
COL4A4P53420 PRKCA-202ENST00000413366 8751 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
COL4A4P53420 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
COL4A4P53420 VPS35-201ENST00000299138 6790 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
COL4A4P53420 C5orf51-204ENST00000612065 1391 ntTSL 5 BASIC5.91□□□□□ -1.46
COL4A4P53420 RNU1-136P-201ENST00000384181 164 ntBASIC5.91□□□□□ -1.46
COL4A4P53420 TRAV25-201ENST00000390454 403 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
COL4A4P53420 OR4K12P-201ENST00000406538 961 ntBASIC5.91□□□□□ -1.46
COL4A4P53420 CYP2AC1P-201ENST00000407830 1173 ntBASIC5.91□□□□□ -1.46
COL4A4P53420 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC5.91□□□□□ -1.46
COL4A4P53420 DPYD-IT1-201ENST00000424982 401 ntTSL 3 BASIC5.91□□□□□ -1.46
COL4A4P53420 VN1R21P-201ENST00000426703 765 ntBASIC5.91□□□□□ -1.46
COL4A4P53420 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC5.91□□□□□ -1.46
COL4A4P53420 SLC36A1-202ENST00000429484 977 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
COL4A4P53420 TPT1P12-201ENST00000448968 492 ntBASIC5.91□□□□□ -1.46
COL4A4P53420 AC009220.1-201ENST00000451614 275 ntBASIC5.91□□□□□ -1.46
COL4A4P53420 AC096741.1-201ENST00000472250 846 ntBASIC5.91□□□□□ -1.46
COL4A4P53420 RPS7P6-201ENST00000485777 579 ntBASIC5.91□□□□□ -1.46
COL4A4P53420 CSNK1A1P3-201ENST00000504105 330 ntBASIC5.91□□□□□ -1.46
COL4A4P53420 SUMO2P19-201ENST00000518920 295 ntBASIC5.91□□□□□ -1.46
COL4A4P53420 AC078820.1-201ENST00000548702 742 ntTSL 3 BASIC5.91□□□□□ -1.46
COL4A4P53420 AC234771.5-201ENST00000600161 514 ntBASIC5.91□□□□□ -1.46
COL4A4P53420 AC010531.5-201ENST00000602779 450 ntTSL 3 BASIC5.91□□□□□ -1.46
COL4A4P53420 AL352984.2-202ENST00000613699 155 ntBASIC5.91□□□□□ -1.46
COL4A4P53420 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC5.91□□□□□ -1.46
COL4A4P53420 ZFHX4-204ENST00000518282 12175 ntAPPRIS ALT2 TSL 5 BASIC5.91□□□□□ -1.46
COL4A4P53420 TRRAP-201ENST00000355540 12590 ntAPPRIS P3 TSL 1 (best) BASIC5.9□□□□□ -1.46
COL4A4P53420 DMD-222ENST00000474231 5209 ntTSL 5 BASIC5.9□□□□□ -1.46
COL4A4P53420 TRPM8-201ENST00000324695 5621 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
COL4A4P53420 GON4L-203ENST00000368331 7823 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.46
COL4A4P53420 CASC19-281ENST00000642118 1554 ntBASIC5.9□□□□□ -1.46
COL4A4P53420 UGT2B15-201ENST00000338206 2077 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
COL4A4P53420 CX3CR1-201ENST00000358309 3151 ntTSL 2 BASIC5.9□□□□□ -1.46
COL4A4P53420 PAICS-201ENST00000264221 3339 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
COL4A4P53420 VCAN-202ENST00000342785 7154 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
COL4A4P53420 TNFSF4-201ENST00000281834 3470 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
COL4A4P53420 CPNE3-203ENST00000517490 4865 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 111.1 ms