Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AC245052.7-201ENST00000601161 359 ntBASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 AC105402.3-203ENST00000608822 885 ntTSL 5 BASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 AL138478.1-201ENST00000612252 832 ntBASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 OR1N2-202ENST00000616791 993 ntAPPRIS P2 BASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 OR1N1-202ENST00000619659 939 ntBASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 RNASE11-211ENST00000620912 883 ntAPPRIS P2 TSL 1 (best) BASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 MIR6503-201ENST00000622884 86 ntBASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 SATL1-202ENST00000509231 2224 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 LINC01011-204ENST00000605901 1573 ntTSL 2 BASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 CA1-222ENST00000523953 2785 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 AF064860.2-201ENST00000457325 1542 ntTSL 3 BASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 AC018717.1-201ENST00000457712 1505 ntBASIC6.59□□□□□ -1.35
TRIM39Q9HCM9 LINC00598-211ENST00000636621 3241 ntTSL 1 (best) BASIC6.59□□□□□ -1.36
TRIM39Q9HCM9 ARHGAP32-201ENST00000310343 10111 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.36
TRIM39Q9HCM9 LINC00630-201ENST00000416381 2012 ntTSL 1 (best) BASIC6.59□□□□□ -1.36
TRIM39Q9HCM9 ZNF571-205ENST00000590751 1700 ntTSL 2 BASIC6.59□□□□□ -1.36
TRIM39Q9HCM9 FAM208A-210ENST00000614531 3441 ntTSL 1 (best) BASIC6.59□□□□□ -1.36
TRIM39Q9HCM9 EXTL2-201ENST00000370113 2835 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 DNM1L-205ENST00000414834 4211 ntTSL 2 BASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 DDX47-201ENST00000352940 1698 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 CENPJ-206ENST00000616936 5020 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 TTC3-201ENST00000354749 9084 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 AC073055.1-201ENST00000456901 1621 ntBASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 DTNA-206ENST00000399121 6490 ntAPPRIS ALT2 TSL 1 (best) BASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 COMMD2-203ENST00000473414 3706 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 PIGA-216ENST00000637296 2113 ntTSL 5 BASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 AL512310.3-201ENST00000547023 1335 ntBASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 CCR8-201ENST00000326306 1253 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 TMEM202-201ENST00000341689 1012 ntAPPRIS P2 TSL 5 BASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 XAGE3-201ENST00000346279 497 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 HHLA3-201ENST00000359875 898 ntAPPRIS ALT2 TSL 1 (best) BASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 MCTS2P-201ENST00000394552 546 ntBASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 PMS2P3-203ENST00000422064 567 ntTSL 5 BASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 RPSAP32-201ENST00000432681 526 ntBASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 FBXW12-203ENST00000436231 1117 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 NPM1P23-201ENST00000440193 849 ntBASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 AC092170.1-201ENST00000440211 356 ntBASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 DSCAM-IT1-201ENST00000440363 720 ntTSL 3 BASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 AC011742.2-201ENST00000443818 352 ntBASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 AL050341.1-201ENST00000447743 313 ntBASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 AL512785.1-201ENST00000447899 517 ntTSL 3 BASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 RN7SL393P-201ENST00000463588 296 ntBASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 NDUFA5P9-201ENST00000472609 340 ntBASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 MTND2P14-201ENST00000482139 351 ntBASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 AC108748.1-201ENST00000487772 515 ntTSL 3 BASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 RN7SL561P-201ENST00000488553 281 ntBASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 AC124242.1-202ENST00000499554 1052 ntTSL 3 BASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 AC092903.2-201ENST00000510244 427 ntTSL 5 BASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 AC074087.1-201ENST00000512059 724 ntBASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 MTCO3P28-201ENST00000513351 515 ntBASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 Y_RNA.688-201ENST00000516565 95 ntBASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 PKIA-AS1-203ENST00000522807 692 ntTSL 3 BASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 DEFB130C-202ENST00000530001 230 ntBASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 AC023813.1-201ENST00000565055 306 ntTSL 5 BASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 AP003115.1-201ENST00000569849 463 ntBASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 MTND4LP24-201ENST00000572277 291 ntBASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 STRADA-207ENST00000578008 1153 ntTSL 5 BASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 ARGFXP2-201ENST00000579304 949 ntBASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 AC015802.2-201ENST00000589690 189 ntBASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 AC040904.1-201ENST00000590850 223 ntBASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 LINC01255-206ENST00000591431 441 ntTSL 5 BASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 AC005479.3-201ENST00000602790 431 ntBASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 NQO2-209ENST00000606474 470 ntTSL 3 BASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 AC108865.2-201ENST00000606881 432 ntBASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 LAMTOR5-AS1-227ENST00000609653 457 ntTSL 2 BASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 AC243919.1-201ENST00000613086 785 ntTSL 5 BASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 AC004241.2-201ENST00000614562 444 ntBASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 HTR1DP1-201ENST00000616500 888 ntBASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 FMO4-201ENST00000367749 2252 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 OSBPL6-207ENST00000409631 3273 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 CPNE3-203ENST00000517490 4865 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 NBPF11-204ENST00000614785 4343 ntAPPRIS ALT2 TSL 5 BASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 VN2R3P-201ENST00000422626 1412 ntBASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 ZNF790-201ENST00000356725 3037 ntAPPRIS P1 TSL 2 BASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 LARP1B-201ENST00000326639 4891 ntAPPRIS P1 TSL 5 BASIC6.58□□□□□ -1.36
TRIM39Q9HCM9 DNAJC15-201ENST00000379221 7853 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 NOSTRIN-209ENST00000458381 2535 ntTSL 2 BASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 RBM22-202ENST00000447771 1386 ntTSL 2 BASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 LRRC37A15P-201ENST00000514785 1355 ntBASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 ANKS1B-207ENST00000546960 1383 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 CSDE1-204ENST00000369530 3774 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 ZBTB8B-201ENST00000609129 12834 ntAPPRIS P1 TSL 5 BASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 RIPK1-202ENST00000380409 3864 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 OR4F17-201ENST00000318050 1054 ntAPPRIS P1 BASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 PPIAP24-201ENST00000328558 471 ntBASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 OR4F5-201ENST00000335137 1054 ntAPPRIS P1 BASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 VTRNA3-1P-201ENST00000362552 102 ntBASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 Y_RNA.472-201ENST00000384322 102 ntBASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 AL049697.3-201ENST00000406493 982 ntBASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 UBE2F-204ENST00000409953 924 ntTSL 3 BASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 AL929472.1-201ENST00000417484 429 ntBASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 MFSD13B-201ENST00000420133 1290 ntBASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 PTP4A1P1-201ENST00000420539 515 ntBASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 BBIP1-205ENST00000436562 383 ntAPPRIS P1 TSL 3 BASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 EMC3-AS1-205ENST00000438698 534 ntBASIC6.57□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 69.6 ms