Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC063949.1-201ENST00000552900 865 ntBASIC7.87□□□□□ -1.15
MSH6P52701 AC106730.2-201ENST00000566641 540 ntBASIC7.87□□□□□ -1.15
MSH6P52701 AC087283.1-201ENST00000604029 1074 ntBASIC7.87□□□□□ -1.15
MSH6P52701 MIR4435-2HG-220ENST00000609902 603 ntTSL 3 BASIC7.87□□□□□ -1.15
MSH6P52701 AC004836.1-201ENST00000623032 634 ntBASIC7.87□□□□□ -1.15
MSH6P52701 LINC01685-203ENST00000634464 1201 ntTSL 5 BASIC7.87□□□□□ -1.15
MSH6P52701 GTDC1-201ENST00000241391 2356 ntTSL 2 BASIC7.87□□□□□ -1.15
MSH6P52701 TM9SF4-202ENST00000398022 3978 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
MSH6P52701 LINC02119-201ENST00000508853 2573 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
MSH6P52701 MEPE-209ENST00000560249 2206 ntAPPRIS ALT2 TSL 1 (best) BASIC7.87□□□□□ -1.15
MSH6P52701 CDKAL1-202ENST00000378610 3115 ntAPPRIS P1 TSL 2 BASIC7.87□□□□□ -1.15
MSH6P52701 OR51E2-203ENST00000641638 2626 ntAPPRIS P1 BASIC7.87□□□□□ -1.15
MSH6P52701 C1orf132-203ENST00000608023 15145 ntTSL 5 BASIC7.87□□□□□ -1.15
MSH6P52701 NBPF19-205ENST00000612881 3715 ntTSL 5 BASIC7.87□□□□□ -1.15
MSH6P52701 ASCC1-203ENST00000342444 2270 ntTSL 2 BASIC7.87□□□□□ -1.15
MSH6P52701 LRRC8B-201ENST00000330947 7593 ntAPPRIS P1 TSL 5 BASIC7.87□□□□□ -1.15
MSH6P52701 ARL14EPL-201ENST00000601302 1914 ntAPPRIS P1 TSL 5 BASIC7.87□□□□□ -1.15
MSH6P52701 BDNF-203ENST00000395978 3988 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
MSH6P52701 RAPGEF4-204ENST00000409036 3975 ntTSL 5 BASIC7.87□□□□□ -1.15
MSH6P52701 CEP250-202ENST00000397527 15703 ntAPPRIS P1 TSL 5 BASIC7.87□□□□□ -1.15
MSH6P52701 FYB2-201ENST00000343433 3135 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
MSH6P52701 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
MSH6P52701 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
MSH6P52701 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
MSH6P52701 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC7.86□□□□□ -1.15
MSH6P52701 AP004289.1-201ENST00000436307 2205 ntBASIC7.86□□□□□ -1.15
MSH6P52701 DRP2-204ENST00000538510 6852 ntAPPRIS P3 TSL 2 BASIC7.86□□□□□ -1.15
MSH6P52701 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
MSH6P52701 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC7.86□□□□□ -1.15
MSH6P52701 LDHAP2-201ENST00000437325 985 ntBASIC7.86□□□□□ -1.15
MSH6P52701 AC008080.2-201ENST00000455149 577 ntTSL 4 BASIC7.86□□□□□ -1.15
MSH6P52701 AC002075.1-201ENST00000457396 676 ntBASIC7.86□□□□□ -1.15
MSH6P52701 MOCS2-205ENST00000508922 1210 ntTSL 5 BASIC7.86□□□□□ -1.15
MSH6P52701 OR5AZ1P-201ENST00000527448 943 ntBASIC7.86□□□□□ -1.15
MSH6P52701 RPL10P14-201ENST00000565265 298 ntBASIC7.86□□□□□ -1.15
MSH6P52701 FOPNL-207ENST00000575073 530 ntTSL 2 BASIC7.86□□□□□ -1.15
MSH6P52701 MOCS2-209ENST00000582677 741 ntTSL 5 BASIC7.86□□□□□ -1.15
MSH6P52701 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC7.86□□□□□ -1.15
MSH6P52701 LINC01966-201ENST00000595809 821 ntTSL 5 BASIC7.86□□□□□ -1.15
MSH6P52701 AC244517.5-203ENST00000624778 517 ntTSL 2 BASIC7.86□□□□□ -1.15
MSH6P52701 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC7.86□□□□□ -1.15
MSH6P52701 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC7.86□□□□□ -1.15
MSH6P52701 TRPM7-201ENST00000313478 10400 ntAPPRIS P3 TSL 1 (best) BASIC7.86□□□□□ -1.15
MSH6P52701 CYP2C8-201ENST00000371270 1923 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
MSH6P52701 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
MSH6P52701 CPNE3-203ENST00000517490 4865 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
MSH6P52701 SOS1-201ENST00000395038 4123 ntAPPRIS ALT2 TSL 5 BASIC7.86□□□□□ -1.15
MSH6P52701 ATP2C1-203ENST00000422190 3386 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
MSH6P52701 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC7.86□□□□□ -1.15
MSH6P52701 ARHGEF6-201ENST00000250617 6019 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
MSH6P52701 AL356317.1-201ENST00000396110 1436 ntBASIC7.86□□□□□ -1.15
MSH6P52701 OR7D2-202ENST00000641288 3248 ntAPPRIS P1 BASIC7.86□□□□□ -1.15
MSH6P52701 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC7.86□□□□□ -1.15
MSH6P52701 IL21-AS1-201ENST00000417927 3748 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
MSH6P52701 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC7.86□□□□□ -1.15
MSH6P52701 NDUFS1-205ENST00000449699 2371 ntAPPRIS P1 TSL 2 BASIC7.86□□□□□ -1.15
MSH6P52701 CHST12-201ENST00000258711 15979 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
MSH6P52701 ZNF101P1-201ENST00000435701 1720 ntBASIC7.85□□□□□ -1.15
MSH6P52701 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC7.85□□□□□ -1.15
MSH6P52701 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC7.85□□□□□ -1.15
MSH6P52701 RNVU1-6-201ENST00000364688 164 ntBASIC7.85□□□□□ -1.15
MSH6P52701 RPS6P23-201ENST00000413224 722 ntBASIC7.85□□□□□ -1.15
MSH6P52701 AC007568.1-201ENST00000422912 471 ntBASIC7.85□□□□□ -1.15
MSH6P52701 PRUNEP1-201ENST00000425846 705 ntBASIC7.85□□□□□ -1.15
MSH6P52701 DSTNP5-201ENST00000427921 523 ntBASIC7.85□□□□□ -1.15
MSH6P52701 AC092324.1-201ENST00000468671 324 ntBASIC7.85□□□□□ -1.15
MSH6P52701 AC106895.1-202ENST00000502956 777 ntTSL 3 BASIC7.85□□□□□ -1.15
MSH6P52701 KLRD1-209ENST00000543420 802 ntTSL 5 BASIC7.85□□□□□ -1.15
MSH6P52701 BNIP3P1-201ENST00000547295 580 ntBASIC7.85□□□□□ -1.15
MSH6P52701 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC7.85□□□□□ -1.15
MSH6P52701 AC100775.1-201ENST00000590942 522 ntTSL 3 BASIC7.85□□□□□ -1.15
MSH6P52701 AC005757.1-201ENST00000591432 472 ntTSL 4 BASIC7.85□□□□□ -1.15
MSH6P52701 AC005084.1-201ENST00000605160 304 ntBASIC7.85□□□□□ -1.15
MSH6P52701 SAMD9L-209ENST00000610760 1221 ntTSL 1 (best) BASIC7.85□□□□□ -1.15
MSH6P52701 MIR7641-1-201ENST00000627518 61 ntBASIC7.85□□□□□ -1.15
MSH6P52701 DNAJC6-203ENST00000395325 5743 ntTSL 1 (best) BASIC7.85□□□□□ -1.15
MSH6P52701 TMEM167B-201ENST00000338272 3730 ntAPPRIS P1 TSL 1 (best) BASIC7.85□□□□□ -1.15
MSH6P52701 ZNF585A-201ENST00000292841 8618 ntAPPRIS P1 TSL 1 (best) BASIC7.85□□□□□ -1.15
MSH6P52701 CHD6-203ENST00000373233 10818 ntAPPRIS P1 TSL 1 (best) BASIC7.85□□□□□ -1.15
MSH6P52701 BPIFC-204ENST00000534972 1809 ntTSL 5 BASIC7.85□□□□□ -1.15
MSH6P52701 CR1-201ENST00000367049 7470 ntAPPRIS P1 TSL 5 BASIC7.85□□□□□ -1.15
MSH6P52701 ABCA11P-202ENST00000504019 2110 ntBASIC7.85□□□□□ -1.15
MSH6P52701 TOR1AIP2-201ENST00000367612 7905 ntAPPRIS P1 TSL 1 (best) BASIC7.85□□□□□ -1.15
MSH6P52701 TTC39B-207ENST00000507993 1950 ntAPPRIS ALT2 TSL 2 BASIC7.85□□□□□ -1.15
MSH6P52701 AL021877.2-201ENST00000624442 10684 ntBASIC7.85□□□□□ -1.15
MSH6P52701 THADA-207ENST00000405975 6114 ntAPPRIS P1 TSL 1 (best) BASIC7.85□□□□□ -1.15
MSH6P52701 EPS15P1-202ENST00000459691 2071 ntBASIC7.85□□□□□ -1.15
MSH6P52701 CDYL2-207ENST00000570137 8159 ntAPPRIS P2 TSL 1 (best) BASIC7.85□□□□□ -1.15
MSH6P52701 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC7.85□□□□□ -1.15
MSH6P52701 OR52I2-203ENST00000641896 6591 ntAPPRIS ALT2 BASIC7.85□□□□□ -1.15
MSH6P52701 TMBIM4-201ENST00000286424 989 ntTSL 5 BASIC7.84□□□□□ -1.15
MSH6P52701 RN7SKP104-201ENST00000362605 328 ntBASIC7.84□□□□□ -1.15
MSH6P52701 TRAV8-7-201ENST00000390456 341 ntAPPRIS P1 BASIC7.84□□□□□ -1.15
MSH6P52701 AC098820.3-201ENST00000414135 976 ntTSL 3 BASIC7.84□□□□□ -1.15
MSH6P52701 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC7.84□□□□□ -1.15
MSH6P52701 AC092647.3-201ENST00000443044 633 ntBASIC7.84□□□□□ -1.15
MSH6P52701 AC090114.3-201ENST00000479267 829 ntBASIC7.84□□□□□ -1.15
MSH6P52701 AC020551.1-201ENST00000512036 539 ntTSL 3 BASIC7.84□□□□□ -1.15
MSH6P52701 RAB9BP1-201ENST00000519581 626 ntBASIC7.84□□□□□ -1.15
MSH6P52701 MAL2-207ENST00000522828 603 ntTSL 3 BASIC7.84□□□□□ -1.15
Retrieved 100 of 98,524 protein–RNA pairs in 98.5 ms