Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AL158850.1-201ENST00000441249 914 ntTSL 3 BASIC6.41□□□□□ -1.38
BDNFP23560 LINC00189-203ENST00000447125 783 ntTSL 3 BASIC6.41□□□□□ -1.38
BDNFP23560 AC008080.2-201ENST00000455149 577 ntTSL 4 BASIC6.41□□□□□ -1.38
BDNFP23560 AC068631.1-205ENST00000455926 409 ntTSL 3 BASIC6.41□□□□□ -1.38
BDNFP23560 AL022319.1-201ENST00000458183 1167 ntBASIC6.41□□□□□ -1.38
BDNFP23560 EIF4A2P4-201ENST00000458691 1196 ntBASIC6.41□□□□□ -1.38
BDNFP23560 AC096741.1-201ENST00000472250 846 ntBASIC6.41□□□□□ -1.38
BDNFP23560 CFHR2-203ENST00000476712 1020 ntAPPRIS ALT2 TSL 3 BASIC6.41□□□□□ -1.38
BDNFP23560 RN7SL193P-201ENST00000491708 276 ntBASIC6.41□□□□□ -1.38
BDNFP23560 LINC02503-201ENST00000510505 812 ntTSL 2 BASIC6.41□□□□□ -1.38
BDNFP23560 AC010260.1-201ENST00000511484 664 ntTSL 3 BASIC6.41□□□□□ -1.38
BDNFP23560 HAND2-AS1-235ENST00000515376 951 ntTSL 3 BASIC6.41□□□□□ -1.38
BDNFP23560 Y_RNA.667-201ENST00000516212 107 ntBASIC6.41□□□□□ -1.38
BDNFP23560 RNA5SP438-201ENST00000516561 112 ntBASIC6.41□□□□□ -1.38
BDNFP23560 OR56A7P-201ENST00000524865 941 ntBASIC6.41□□□□□ -1.38
BDNFP23560 OR52B2-201ENST00000530810 1079 ntAPPRIS P1 BASIC6.41□□□□□ -1.38
BDNFP23560 AP000763.3-201ENST00000542598 334 ntTSL 5 BASIC6.41□□□□□ -1.38
BDNFP23560 AC068305.2-201ENST00000550567 1205 ntBASIC6.41□□□□□ -1.38
BDNFP23560 AC004551.1-201ENST00000552784 575 ntTSL 4 BASIC6.41□□□□□ -1.38
BDNFP23560 AC090236.2-201ENST00000587933 1101 ntBASIC6.41□□□□□ -1.38
BDNFP23560 AC004160.1-210ENST00000599875 689 ntTSL 5 BASIC6.41□□□□□ -1.38
BDNFP23560 AC005021.1-201ENST00000608730 355 ntBASIC6.41□□□□□ -1.38
BDNFP23560 RSU1P2-204ENST00000619977 1240 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
BDNFP23560 AC129778.1-202ENST00000623812 261 ntBASIC6.41□□□□□ -1.38
BDNFP23560 AP001962.1-201ENST00000624114 559 ntBASIC6.41□□□□□ -1.38
BDNFP23560 AL162377.2-201ENST00000624532 337 ntBASIC6.41□□□□□ -1.38
BDNFP23560 AL591379.1-207ENST00000635982 261 ntBASIC6.41□□□□□ -1.38
BDNFP23560 AMYH02020865.1-205ENST00000636189 261 ntBASIC6.41□□□□□ -1.38
BDNFP23560 CADM2-202ENST00000405615 1314 ntAPPRIS P3 TSL 1 (best) BASIC6.41□□□□□ -1.38
BDNFP23560 SBNO1-202ENST00000420886 10981 ntAPPRIS ALT1 TSL 1 (best) BASIC6.41□□□□□ -1.38
BDNFP23560 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
BDNFP23560 CTDSPL2-204ENST00000558966 1895 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
BDNFP23560 CLASP2-205ENST00000461133 4814 ntTSL 5 BASIC6.41□□□□□ -1.38
BDNFP23560 PLD1-202ENST00000351298 5604 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
BDNFP23560 FCGR1B-209ENST00000616817 1584 ntAPPRIS ALT2 TSL 5 BASIC6.4□□□□□ -1.38
BDNFP23560 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
BDNFP23560 GIGYF2-246ENST00000629305 7878 ntTSL 5 BASIC6.4□□□□□ -1.38
BDNFP23560 AC144833.1-201ENST00000567953 4089 ntBASIC6.4□□□□□ -1.38
BDNFP23560 TCF4-284ENST00000637169 7553 ntTSL 5 BASIC6.4□□□□□ -1.38
BDNFP23560 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
BDNFP23560 ADAM20-201ENST00000256389 2795 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
BDNFP23560 ATP6V1G3-203ENST00000367382 611 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
BDNFP23560 NPM1P37-201ENST00000403105 874 ntBASIC6.4□□□□□ -1.38
BDNFP23560 SNRPEP6-201ENST00000407465 277 ntBASIC6.4□□□□□ -1.38
BDNFP23560 GAS5-202ENST00000414075 413 ntTSL 2 BASIC6.4□□□□□ -1.38
BDNFP23560 AC068286.1-201ENST00000416173 467 ntTSL 4 BASIC6.4□□□□□ -1.38
BDNFP23560 IPPKP1-201ENST00000422501 768 ntBASIC6.4□□□□□ -1.38
BDNFP23560 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC6.4□□□□□ -1.38
BDNFP23560 HTR3E-AS1-201ENST00000431427 515 ntTSL 4 BASIC6.4□□□□□ -1.38
BDNFP23560 CYCSP11-201ENST00000436426 315 ntBASIC6.4□□□□□ -1.38
BDNFP23560 AL445466.1-201ENST00000448432 357 ntBASIC6.4□□□□□ -1.38
BDNFP23560 AL358876.1-201ENST00000453364 1075 ntBASIC6.4□□□□□ -1.38
BDNFP23560 AC092865.4-201ENST00000477936 615 ntBASIC6.4□□□□□ -1.38
BDNFP23560 MRPS22-205ENST00000478464 1065 ntTSL 5 BASIC6.4□□□□□ -1.38
BDNFP23560 AC079080.1-201ENST00000479841 822 ntBASIC6.4□□□□□ -1.38
BDNFP23560 RNU6-491P-201ENST00000516099 110 ntBASIC6.4□□□□□ -1.38
BDNFP23560 snoU109.6-201ENST00000516831 118 ntBASIC6.4□□□□□ -1.38
BDNFP23560 AC060775.1-201ENST00000518241 520 ntBASIC6.4□□□□□ -1.38
BDNFP23560 TRIM51DP-201ENST00000529746 596 ntBASIC6.4□□□□□ -1.38
BDNFP23560 AC005244.1-201ENST00000582566 339 ntBASIC6.4□□□□□ -1.38
BDNFP23560 AC127024.4-201ENST00000585212 308 ntTSL 5 BASIC6.4□□□□□ -1.38
BDNFP23560 ZNF528-211ENST00000598192 625 ntTSL 3 BASIC6.4□□□□□ -1.38
BDNFP23560 MIR6809-201ENST00000612189 116 ntBASIC6.4□□□□□ -1.38
BDNFP23560 SSX4B-202ENST00000619890 1092 ntTSL 5 BASIC6.4□□□□□ -1.38
BDNFP23560 SSX4-202ENST00000620320 1092 ntTSL 5 BASIC6.4□□□□□ -1.38
BDNFP23560 AC145207.9-201ENST00000623802 325 ntBASIC6.4□□□□□ -1.38
BDNFP23560 AP002967.1-201ENST00000624203 539 ntBASIC6.4□□□□□ -1.38
BDNFP23560 TSPAN14-207ENST00000429989 16183 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
BDNFP23560 SLC4A8-202ENST00000358657 11731 ntAPPRIS ALT2 TSL 1 (best) BASIC6.4□□□□□ -1.39
BDNFP23560 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC6.4□□□□□ -1.39
BDNFP23560 PGM3-215ENST00000616566 5905 ntTSL 2 BASIC6.4□□□□□ -1.39
BDNFP23560 TOP2B-201ENST00000264331 5358 ntAPPRIS ALT2 TSL 5 BASIC6.4□□□□□ -1.39
BDNFP23560 ING3-204ENST00000431467 1447 ntTSL 2 BASIC6.4□□□□□ -1.39
BDNFP23560 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
BDNFP23560 LINC02086-202ENST00000492522 2091 ntTSL 5 BASIC6.4□□□□□ -1.39
BDNFP23560 SLC39A12-201ENST00000377369 2808 ntAPPRIS ALT1 TSL 1 (best) BASIC6.4□□□□□ -1.39
BDNFP23560 PIGN-247ENST00000640540 4720 ntTSL 5 BASIC6.4□□□□□ -1.39
BDNFP23560 ZNF283-203ENST00000588797 2428 ntTSL 2 BASIC6.39□□□□□ -1.39
BDNFP23560 OR6C75-202ENST00000641576 4569 ntAPPRIS P1 BASIC6.39□□□□□ -1.39
BDNFP23560 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
BDNFP23560 NOVA1-206ENST00000539517 3912 ntAPPRIS P4 TSL 1 (best) BASIC6.39□□□□□ -1.39
BDNFP23560 PRKDC-201ENST00000314191 13509 ntAPPRIS P4 TSL 1 (best) BASIC6.39□□□□□ -1.39
BDNFP23560 MAPRE2-211ENST00000589699 4080 ntAPPRIS ALT1 TSL 2 BASIC6.39□□□□□ -1.39
BDNFP23560 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC6.39□□□□□ -1.39
BDNFP23560 TRPC1-205ENST00000612385 3620 ntAPPRIS P3 TSL 1 (best) BASIC6.39□□□□□ -1.39
BDNFP23560 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
BDNFP23560 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC6.39□□□□□ -1.39
BDNFP23560 FETUB-203ENST00000382136 1040 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
BDNFP23560 HMGN1P20-201ENST00000411849 300 ntBASIC6.39□□□□□ -1.39
BDNFP23560 LIX1L-AS1-202ENST00000412239 570 ntTSL 2 BASIC6.39□□□□□ -1.39
BDNFP23560 AL354890.1-201ENST00000413730 346 ntBASIC6.39□□□□□ -1.39
BDNFP23560 AC022173.1-201ENST00000418554 577 ntTSL 4 BASIC6.39□□□□□ -1.39
BDNFP23560 AC007562.1-201ENST00000421819 517 ntBASIC6.39□□□□□ -1.39
BDNFP23560 AC007563.3-201ENST00000433233 371 ntBASIC6.39□□□□□ -1.39
BDNFP23560 AP000936.3-201ENST00000438127 255 ntBASIC6.39□□□□□ -1.39
BDNFP23560 CCDC17-203ENST00000445048 443 ntAPPRIS ALT2 TSL 1 (best) BASIC6.39□□□□□ -1.39
BDNFP23560 AC023274.2-201ENST00000445264 521 ntBASIC6.39□□□□□ -1.39
BDNFP23560 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC6.39□□□□□ -1.39
BDNFP23560 Metazoa_SRP.158-201ENST00000487171 294 ntBASIC6.39□□□□□ -1.39
BDNFP23560 AC114728.1-201ENST00000488289 483 ntBASIC6.39□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 118 ms