Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 OR4A42P-201ENST00000531397 938 ntBASIC5.39□□□□□ -1.55
HOXD4P09016 LINC01895-201ENST00000558690 404 ntTSL 5 BASIC5.39□□□□□ -1.55
HOXD4P09016 AL356801.1-201ENST00000559320 294 ntBASIC5.39□□□□□ -1.55
HOXD4P09016 AC009121.2-202ENST00000572706 505 ntTSL 3 BASIC5.39□□□□□ -1.55
HOXD4P09016 MIR3189-201ENST00000578735 73 ntBASIC5.39□□□□□ -1.55
HOXD4P09016 AP000897.2-201ENST00000579509 1057 ntTSL 3 BASIC5.39□□□□□ -1.55
HOXD4P09016 SNORD95-201ENST00000579879 68 ntBASIC5.39□□□□□ -1.55
HOXD4P09016 Z98949.1-228ENST00000595093 798 ntTSL 5 BASIC5.39□□□□□ -1.55
HOXD4P09016 AC211433.1-206ENST00000595409 733 ntTSL 5 BASIC5.39□□□□□ -1.55
HOXD4P09016 AL160400.1-201ENST00000606385 1030 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
HOXD4P09016 RNA5SP440-201ENST00000612665 119 ntBASIC5.39□□□□□ -1.55
HOXD4P09016 RN7SL787P-201ENST00000613000 284 ntBASIC5.39□□□□□ -1.55
HOXD4P09016 AC004477.3-201ENST00000614061 590 ntBASIC5.39□□□□□ -1.55
HOXD4P09016 AC138965.3-201ENST00000623875 498 ntBASIC5.39□□□□□ -1.55
HOXD4P09016 AC018793.1-201ENST00000638166 585 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
HOXD4P09016 AC018793.2-201ENST00000639584 585 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
HOXD4P09016 AC018793.3-201ENST00000640805 585 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
HOXD4P09016 OR8G3P-202ENST00000641572 1255 ntBASIC5.39□□□□□ -1.55
HOXD4P09016 AC009095.1-201ENST00000388909 1326 ntTSL 5 BASIC5.39□□□□□ -1.55
HOXD4P09016 SPATA1-206ENST00000490879 2888 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
HOXD4P09016 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC5.39□□□□□ -1.55
HOXD4P09016 HEPHL1-201ENST00000315765 5345 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
HOXD4P09016 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
HOXD4P09016 ADGRF1-203ENST00000371253 5468 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
HOXD4P09016 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC5.39□□□□□ -1.55
HOXD4P09016 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
HOXD4P09016 PLEKHA5-202ENST00000424268 4391 ntTSL 2 BASIC5.39□□□□□ -1.55
HOXD4P09016 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
HOXD4P09016 SHQ1P1-201ENST00000437111 1544 ntBASIC5.38□□□□□ -1.55
HOXD4P09016 PSG10P-201ENST00000501199 1500 ntBASIC5.38□□□□□ -1.55
HOXD4P09016 TLR6-201ENST00000381950 2938 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
HOXD4P09016 OR13C1P-202ENST00000641378 2919 ntBASIC5.38□□□□□ -1.55
HOXD4P09016 ZNF208-201ENST00000397126 3992 ntAPPRIS P1 TSL 3 BASIC5.38□□□□□ -1.55
HOXD4P09016 PAK3-201ENST00000262836 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC5.38□□□□□ -1.55
HOXD4P09016 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
HOXD4P09016 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
HOXD4P09016 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC5.38□□□□□ -1.55
HOXD4P09016 UNC5C-205ENST00000610318 9403 ntTSL 5 BASIC5.38□□□□□ -1.55
HOXD4P09016 OR4K13-201ENST00000315693 915 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
HOXD4P09016 TRAV35-201ENST00000390462 330 ntBASIC5.38□□□□□ -1.55
HOXD4P09016 AL513325.1-201ENST00000417716 1034 ntBASIC5.38□□□□□ -1.55
HOXD4P09016 AL929472.2-201ENST00000419993 481 ntTSL 5 BASIC5.38□□□□□ -1.55
HOXD4P09016 RPL34P3-201ENST00000421454 338 ntBASIC5.38□□□□□ -1.55
HOXD4P09016 LINC01501-201ENST00000427523 409 ntTSL 3 BASIC5.38□□□□□ -1.55
HOXD4P09016 TRGC2-201ENST00000436911 1013 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
HOXD4P09016 CASP5-205ENST00000444749 1237 ntAPPRIS P1 TSL 2 BASIC5.38□□□□□ -1.55
HOXD4P09016 TM4SF1-AS1-201ENST00000484046 488 ntTSL 3 BASIC5.38□□□□□ -1.55
HOXD4P09016 AC008945.1-201ENST00000505144 499 ntBASIC5.38□□□□□ -1.55
HOXD4P09016 THAP6-212ENST00000508105 1103 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
HOXD4P09016 ASNSP4-201ENST00000511103 447 ntBASIC5.38□□□□□ -1.55
HOXD4P09016 LINC02472-201ENST00000512268 575 ntTSL 2 BASIC5.38□□□□□ -1.55
HOXD4P09016 LINC01598-206ENST00000513381 499 ntTSL 4 BASIC5.38□□□□□ -1.55
HOXD4P09016 ZCCHC10-210ENST00000513848 876 ntAPPRIS ALT2 TSL 2 BASIC5.38□□□□□ -1.55
HOXD4P09016 LINC00535-202ENST00000517785 264 ntTSL 3 BASIC5.38□□□□□ -1.55
HOXD4P09016 AC090155.1-201ENST00000520800 407 ntTSL 3 BASIC5.38□□□□□ -1.55
HOXD4P09016 AC115837.2-201ENST00000522127 677 ntTSL 3 BASIC5.38□□□□□ -1.55
HOXD4P09016 LINC01033-204ENST00000523194 715 ntTSL 2 BASIC5.38□□□□□ -1.55
HOXD4P09016 AC109466.1-202ENST00000523648 748 ntTSL 3 BASIC5.38□□□□□ -1.55
HOXD4P09016 CASP5-209ENST00000531367 879 ntTSL 5 BASIC5.38□□□□□ -1.55
HOXD4P09016 AC103996.3-201ENST00000553477 442 ntTSL 3 BASIC5.38□□□□□ -1.55
HOXD4P09016 AC084757.2-201ENST00000559165 540 ntTSL 2 BASIC5.38□□□□□ -1.55
HOXD4P09016 AC138907.7-201ENST00000568972 358 ntTSL 5 BASIC5.38□□□□□ -1.55
HOXD4P09016 AC015727.1-201ENST00000572792 512 ntTSL 5 BASIC5.38□□□□□ -1.55
HOXD4P09016 AC099850.2-201ENST00000577660 557 ntAPPRIS P1 TSL 3 BASIC5.38□□□□□ -1.55
HOXD4P09016 AC119403.2-201ENST00000590960 598 ntBASIC5.38□□□□□ -1.55
HOXD4P09016 AC010463.2-201ENST00000597592 661 ntTSL 5 BASIC5.38□□□□□ -1.55
HOXD4P09016 CDC37L1-AS1-202ENST00000609131 235 ntTSL 2 BASIC5.38□□□□□ -1.55
HOXD4P09016 SUPT3H-206ENST00000637763 498 ntTSL 3 BASIC5.38□□□□□ -1.55
HOXD4P09016 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC5.38□□□□□ -1.55
HOXD4P09016 DPH5-203ENST00000370109 1316 ntAPPRIS P4 TSL 1 (best) BASIC5.38□□□□□ -1.55
HOXD4P09016 ARCN1-202ENST00000359415 4038 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
HOXD4P09016 HDAC1P2-201ENST00000453661 1398 ntBASIC5.38□□□□□ -1.55
HOXD4P09016 ELOVL6-202ENST00000394607 6454 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
HOXD4P09016 BPIFC-201ENST00000300399 1980 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
HOXD4P09016 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC5.38□□□□□ -1.55
HOXD4P09016 NLN-202ENST00000502464 8354 ntTSL 5 BASIC5.38□□□□□ -1.55
HOXD4P09016 ZNF525-201ENST00000467003 6107 ntTSL 4 BASIC5.38□□□□□ -1.55
HOXD4P09016 PIGK-202ENST00000370812 4596 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
HOXD4P09016 AC093849.1-201ENST00000563631 2209 ntBASIC5.38□□□□□ -1.55
HOXD4P09016 CYBB-201ENST00000378588 4324 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
HOXD4P09016 BIRC3-207ENST00000615299 4342 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
HOXD4P09016 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC5.37□□□□□ -1.55
HOXD4P09016 AC003985.2-201ENST00000562268 1669 ntBASIC5.37□□□□□ -1.55
HOXD4P09016 SLC35A5-201ENST00000261034 2444 ntTSL 5 BASIC5.37□□□□□ -1.55
HOXD4P09016 RBM48-202ENST00000481551 4093 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
HOXD4P09016 KIAA1328-202ENST00000586135 1863 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
HOXD4P09016 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
HOXD4P09016 SLC12A6-218ENST00000560611 4239 ntAPPRIS ALT1 TSL 1 (best) BASIC5.37□□□□□ -1.55
HOXD4P09016 AC096921.2-201ENST00000561507 1916 ntBASIC5.37□□□□□ -1.55
HOXD4P09016 AP001541.1-201ENST00000623322 1904 ntBASIC5.37□□□□□ -1.55
HOXD4P09016 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
HOXD4P09016 OSBPL9-206ENST00000453295 2842 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
HOXD4P09016 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
HOXD4P09016 WDPCP-203ENST00000409120 5408 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
HOXD4P09016 MIR375-201ENST00000362103 64 ntBASIC5.37□□□□□ -1.55
HOXD4P09016 RNU1-150P-201ENST00000362491 162 ntBASIC5.37□□□□□ -1.55
HOXD4P09016 RNA5SP375-201ENST00000362975 119 ntBASIC5.37□□□□□ -1.55
HOXD4P09016 AL626787.1-201ENST00000366136 594 ntTSL 4 BASIC5.37□□□□□ -1.55
HOXD4P09016 OR2L2-201ENST00000366479 1134 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
HOXD4P09016 AL096711.1-201ENST00000404780 554 ntBASIC5.37□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 156.9 ms