Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 MYO5BP2-201ENST00000449815 1277 ntBASIC5.72□□□□□ -1.49
CCDC3Q9BQI4 FCF1P7-201ENST00000451185 558 ntBASIC5.72□□□□□ -1.49
CCDC3Q9BQI4 LRRC37A14P-201ENST00000452297 462 ntBASIC5.72□□□□□ -1.49
CCDC3Q9BQI4 AC093166.4-201ENST00000457867 318 ntBASIC5.72□□□□□ -1.49
CCDC3Q9BQI4 AC004692.2-203ENST00000458590 497 ntTSL 4 BASIC5.72□□□□□ -1.49
CCDC3Q9BQI4 RGS1-203ENST00000469578 1034 ntTSL 2 BASIC5.72□□□□□ -1.49
CCDC3Q9BQI4 AC099521.1-201ENST00000482557 334 ntBASIC5.72□□□□□ -1.49
CCDC3Q9BQI4 AC074087.1-201ENST00000512059 724 ntBASIC5.72□□□□□ -1.49
CCDC3Q9BQI4 AC025857.1-201ENST00000525252 377 ntBASIC5.72□□□□□ -1.49
CCDC3Q9BQI4 AP003031.2-202ENST00000533590 572 ntTSL 4 BASIC5.72□□□□□ -1.49
CCDC3Q9BQI4 GPRC5D-AS1-208ENST00000545914 566 ntTSL 3 BASIC5.72□□□□□ -1.49
CCDC3Q9BQI4 AC009396.2-201ENST00000555954 700 ntTSL 3 BASIC5.72□□□□□ -1.49
CCDC3Q9BQI4 ULK4P1-201ENST00000564495 875 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC3Q9BQI4 ULK4P2-204ENST00000569682 798 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC3Q9BQI4 AC090953.1-201ENST00000604305 1092 ntBASIC5.72□□□□□ -1.49
CCDC3Q9BQI4 RN7SL544P-201ENST00000617232 284 ntBASIC5.72□□□□□ -1.49
CCDC3Q9BQI4 RN7SL763P-201ENST00000620922 284 ntBASIC5.72□□□□□ -1.49
CCDC3Q9BQI4 OR2L8-201ENST00000623922 939 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
CCDC3Q9BQI4 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC5.72□□□□□ -1.49
CCDC3Q9BQI4 ATM-229ENST00000639953 587 ntTSL 5 BASIC5.72□□□□□ -1.49
CCDC3Q9BQI4 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
CCDC3Q9BQI4 IL23R-201ENST00000347310 2912 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC3Q9BQI4 AL078595.2-201ENST00000605309 1780 ntBASIC5.72□□□□□ -1.49
CCDC3Q9BQI4 TESPA1-212ENST00000532804 2000 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
CCDC3Q9BQI4 SLC16A6-201ENST00000327268 3807 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC3Q9BQI4 IQCG-201ENST00000265239 2262 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC3Q9BQI4 LZTFL1-215ENST00000536047 4342 ntTSL 2 BASIC5.72□□□□□ -1.49
CCDC3Q9BQI4 DNM1L-201ENST00000266481 3101 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC3Q9BQI4 TRAPPC11-209ENST00000512476 2546 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC3Q9BQI4 AL121768.1-201ENST00000613917 2544 ntBASIC5.72□□□□□ -1.49
CCDC3Q9BQI4 GABRA2-205ENST00000507069 1562 ntTSL 3 BASIC5.72□□□□□ -1.49
CCDC3Q9BQI4 BTN3A2-203ENST00000396934 3672 ntAPPRIS ALT2 TSL 2 BASIC5.71□□□□□ -1.49
CCDC3Q9BQI4 TNFSF4-201ENST00000281834 3470 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
CCDC3Q9BQI4 TTC41P-205ENST00000551270 3963 ntBASIC5.71□□□□□ -1.49
CCDC3Q9BQI4 CHRDL1-202ENST00000372045 3860 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC3Q9BQI4 ST7-204ENST00000393444 2113 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC3Q9BQI4 THAP12P9-201ENST00000503971 2360 ntBASIC5.71□□□□□ -1.5
CCDC3Q9BQI4 ZNF215-205ENST00000529903 1396 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC3Q9BQI4 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC5.71□□□□□ -1.5
CCDC3Q9BQI4 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC3Q9BQI4 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC5.71□□□□□ -1.5
CCDC3Q9BQI4 OR2G3-201ENST00000320002 930 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
CCDC3Q9BQI4 RN7SKP160-201ENST00000363804 340 ntBASIC5.71□□□□□ -1.5
CCDC3Q9BQI4 RN7SKP278-201ENST00000410504 342 ntBASIC5.71□□□□□ -1.5
CCDC3Q9BQI4 MYL6P5-201ENST00000412707 459 ntBASIC5.71□□□□□ -1.5
CCDC3Q9BQI4 PSMA3-202ENST00000412908 908 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC3Q9BQI4 MTATP6P19-201ENST00000413797 659 ntBASIC5.71□□□□□ -1.5
CCDC3Q9BQI4 MIRLET7DHG-201ENST00000416309 1294 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC3Q9BQI4 Z93019.1-201ENST00000416450 973 ntBASIC5.71□□□□□ -1.5
CCDC3Q9BQI4 CASP5-203ENST00000418434 1023 ntTSL 5 BASIC5.71□□□□□ -1.5
CCDC3Q9BQI4 AC099677.3-201ENST00000427081 395 ntBASIC5.71□□□□□ -1.5
CCDC3Q9BQI4 EEF1B2P6-201ENST00000445713 673 ntBASIC5.71□□□□□ -1.5
CCDC3Q9BQI4 AC073909.1-201ENST00000447112 999 ntBASIC5.71□□□□□ -1.5
CCDC3Q9BQI4 SRGAP3-AS4-201ENST00000449023 377 ntTSL 2 BASIC5.71□□□□□ -1.5
CCDC3Q9BQI4 AC000061.1-201ENST00000456270 376 ntTSL 3 BASIC5.71□□□□□ -1.5
CCDC3Q9BQI4 AC090589.1-201ENST00000473109 362 ntBASIC5.71□□□□□ -1.5
CCDC3Q9BQI4 AC246817.2-206ENST00000520570 582 ntTSL 4 BASIC5.71□□□□□ -1.5
CCDC3Q9BQI4 AC025366.1-201ENST00000523264 202 ntTSL 3 BASIC5.71□□□□□ -1.5
CCDC3Q9BQI4 ANP32E-205ENST00000533654 908 ntTSL 2 BASIC5.71□□□□□ -1.5
CCDC3Q9BQI4 AC007527.1-201ENST00000535528 313 ntTSL 2 BASIC5.71□□□□□ -1.5
CCDC3Q9BQI4 AC100821.2-201ENST00000565668 440 ntTSL 2 BASIC5.71□□□□□ -1.5
CCDC3Q9BQI4 AC129507.1-204ENST00000573601 503 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC3Q9BQI4 AC012588.1-201ENST00000583852 358 ntTSL 3 BASIC5.71□□□□□ -1.5
CCDC3Q9BQI4 AC119868.1-202ENST00000584741 347 ntTSL 2 BASIC5.71□□□□□ -1.5
CCDC3Q9BQI4 AC002398.1-201ENST00000589397 427 ntTSL 5 BASIC5.71□□□□□ -1.5
CCDC3Q9BQI4 AC020658.4-201ENST00000613987 684 ntBASIC5.71□□□□□ -1.5
CCDC3Q9BQI4 AL139099.4-201ENST00000614802 114 ntBASIC5.71□□□□□ -1.5
CCDC3Q9BQI4 Metazoa_SRP.179-201ENST00000619020 241 ntBASIC5.71□□□□□ -1.5
CCDC3Q9BQI4 AC027279.4-201ENST00000624371 2072 ntBASIC5.71□□□□□ -1.5
CCDC3Q9BQI4 ZNF184-202ENST00000377419 2899 ntAPPRIS P1 TSL 4 BASIC5.71□□□□□ -1.5
CCDC3Q9BQI4 PSMC6-219ENST00000612399 1590 ntAPPRIS P2 TSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC3Q9BQI4 LINC00698-203ENST00000468072 1957 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC3Q9BQI4 CEPT1-211ENST00000615636 1966 ntTSL 5 BASIC5.71□□□□□ -1.5
CCDC3Q9BQI4 SAMMSON-210ENST00000641260 1308 ntBASIC5.71□□□□□ -1.5
CCDC3Q9BQI4 RAB9B-201ENST00000243298 3748 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC3Q9BQI4 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC3Q9BQI4 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC3Q9BQI4 BDNF-210ENST00000438929 4059 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC3Q9BQI4 CARD6-201ENST00000254691 4221 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC3Q9BQI4 ARID2-202ENST00000422737 5481 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC3Q9BQI4 FRMD7-202ENST00000370879 2864 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC3Q9BQI4 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC3Q9BQI4 PDE5A-203ENST00000394439 6770 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
CCDC3Q9BQI4 STYX-202ENST00000442123 4554 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC3Q9BQI4 TXK-201ENST00000264316 2914 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC3Q9BQI4 CUZD1-205ENST00000368904 2903 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC3Q9BQI4 ZC2HC1B-201ENST00000237275 1002 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC3Q9BQI4 SPATA4-201ENST00000280191 1169 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC3Q9BQI4 SNORA64.1-201ENST00000362600 132 ntBASIC5.7□□□□□ -1.5
CCDC3Q9BQI4 RNA5SP132-201ENST00000364725 118 ntBASIC5.7□□□□□ -1.5
CCDC3Q9BQI4 MIR1178-201ENST00000408396 91 ntBASIC5.7□□□□□ -1.5
CCDC3Q9BQI4 RPS4XP5-201ENST00000419038 768 ntBASIC5.7□□□□□ -1.5
CCDC3Q9BQI4 AC244453.4-201ENST00000419150 388 ntBASIC5.7□□□□□ -1.5
CCDC3Q9BQI4 AL662874.1-201ENST00000426065 230 ntBASIC5.7□□□□□ -1.5
CCDC3Q9BQI4 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC5.7□□□□□ -1.5
CCDC3Q9BQI4 AL162727.2-201ENST00000428429 395 ntTSL 3 BASIC5.7□□□□□ -1.5
CCDC3Q9BQI4 HMGB3P24-201ENST00000433260 622 ntBASIC5.7□□□□□ -1.5
CCDC3Q9BQI4 AL162739.1-201ENST00000450606 307 ntBASIC5.7□□□□□ -1.5
CCDC3Q9BQI4 OR52Y1P-201ENST00000452418 828 ntBASIC5.7□□□□□ -1.5
CCDC3Q9BQI4 LINC02541-202ENST00000452675 465 ntTSL 5 BASIC5.7□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 111.6 ms