Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC007568.1-201ENST00000422912 471 ntBASIC5.97□□□□□ -1.45
HDDC3Q8N4P3 AC002504.1-201ENST00000438281 691 ntBASIC5.97□□□□□ -1.45
HDDC3Q8N4P3 SUMO2P3-201ENST00000438311 288 ntBASIC5.97□□□□□ -1.45
HDDC3Q8N4P3 MTCO3P17-201ENST00000443775 513 ntBASIC5.97□□□□□ -1.45
HDDC3Q8N4P3 AC023274.2-201ENST00000445264 521 ntBASIC5.97□□□□□ -1.45
HDDC3Q8N4P3 SUMO2P1-206ENST00000445436 284 ntBASIC5.97□□□□□ -1.45
HDDC3Q8N4P3 SIAH1P1-201ENST00000479411 923 ntBASIC5.97□□□□□ -1.45
HDDC3Q8N4P3 RPL23AP40-201ENST00000487630 390 ntBASIC5.97□□□□□ -1.45
HDDC3Q8N4P3 RPL32P9-201ENST00000487963 407 ntBASIC5.97□□□□□ -1.45
HDDC3Q8N4P3 CCDC11P1-201ENST00000503137 1162 ntBASIC5.97□□□□□ -1.45
HDDC3Q8N4P3 HOMER1-204ENST00000508576 815 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
HDDC3Q8N4P3 GAPDHP71-201ENST00000511530 1003 ntBASIC5.97□□□□□ -1.45
HDDC3Q8N4P3 BX510359.5-201ENST00000515651 304 ntBASIC5.97□□□□□ -1.45
HDDC3Q8N4P3 RNU4-18P-201ENST00000516751 149 ntBASIC5.97□□□□□ -1.45
HDDC3Q8N4P3 AC018682.2-201ENST00000517716 399 ntTSL 5 BASIC5.97□□□□□ -1.45
HDDC3Q8N4P3 HDAC2-AS2-217ENST00000523087 493 ntTSL 3 BASIC5.97□□□□□ -1.45
HDDC3Q8N4P3 HNF1A-AS1-203ENST00000537361 659 ntTSL 3 BASIC5.97□□□□□ -1.45
HDDC3Q8N4P3 TCEANC-205ENST00000544987 1146 ntTSL 5 BASIC5.97□□□□□ -1.45
HDDC3Q8N4P3 CDC37L1-AS1-202ENST00000609131 235 ntTSL 2 BASIC5.97□□□□□ -1.45
HDDC3Q8N4P3 SUPT3H-206ENST00000637763 498 ntTSL 3 BASIC5.97□□□□□ -1.45
HDDC3Q8N4P3 IGIP-201ENST00000333305 3458 ntAPPRIS P1 BASIC5.97□□□□□ -1.45
HDDC3Q8N4P3 MUT-201ENST00000274813 3749 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
HDDC3Q8N4P3 OSBPL9-203ENST00000428468 2893 ntAPPRIS P3 TSL 1 (best) BASIC5.97□□□□□ -1.45
HDDC3Q8N4P3 MPP5-204ENST00000555925 5006 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
HDDC3Q8N4P3 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC5.97□□□□□ -1.45
HDDC3Q8N4P3 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
HDDC3Q8N4P3 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC5.97□□□□□ -1.45
HDDC3Q8N4P3 PAICS-201ENST00000264221 3339 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
HDDC3Q8N4P3 MCM3AP-AS1-204ENST00000432735 2302 ntTSL 2 BASIC5.97□□□□□ -1.45
HDDC3Q8N4P3 CDKL4-201ENST00000378803 1567 ntAPPRIS P2 TSL 1 (best) BASIC5.97□□□□□ -1.45
HDDC3Q8N4P3 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
HDDC3Q8N4P3 LINC01568-202ENST00000555721 1325 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
HDDC3Q8N4P3 ANK2-226ENST00000612754 6134 ntTSL 5 BASIC5.97□□□□□ -1.45
HDDC3Q8N4P3 AFP-202ENST00000395792 2484 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
HDDC3Q8N4P3 MEPE-209ENST00000560249 2206 ntAPPRIS ALT2 TSL 1 (best) BASIC5.97□□□□□ -1.45
HDDC3Q8N4P3 AC004852.2-201ENST00000614289 2218 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
HDDC3Q8N4P3 LINC00698-203ENST00000468072 1957 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
HDDC3Q8N4P3 AC020656.2-201ENST00000613291 5309 ntBASIC5.96□□□□□ -1.45
HDDC3Q8N4P3 ZSCAN26-201ENST00000316606 2362 ntTSL 1 (best) BASIC5.96□□□□□ -1.45
HDDC3Q8N4P3 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC5.96□□□□□ -1.45
HDDC3Q8N4P3 AC092378.1-202ENST00000500117 2296 ntTSL 2 BASIC5.96□□□□□ -1.45
HDDC3Q8N4P3 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC5.96□□□□□ -1.45
HDDC3Q8N4P3 PPIAL4G-201ENST00000419275 3856 ntAPPRIS P1 BASIC5.96□□□□□ -1.46
HDDC3Q8N4P3 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
HDDC3Q8N4P3 CNTN1-204ENST00000547849 3125 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
HDDC3Q8N4P3 FLJ12825-201ENST00000515617 3942 ntTSL 2 BASIC5.96□□□□□ -1.46
HDDC3Q8N4P3 OR14A16-201ENST00000357627 930 ntAPPRIS P1 BASIC5.96□□□□□ -1.46
HDDC3Q8N4P3 SNORA58B-201ENST00000364259 136 ntBASIC5.96□□□□□ -1.46
HDDC3Q8N4P3 ARGLU1-202ENST00000375926 821 ntAPPRIS P1 TSL 5 BASIC5.96□□□□□ -1.46
HDDC3Q8N4P3 IGKV5-2-201ENST00000390244 408 ntAPPRIS P1 BASIC5.96□□□□□ -1.46
HDDC3Q8N4P3 AC093155.2-201ENST00000420734 937 ntBASIC5.96□□□□□ -1.46
HDDC3Q8N4P3 AL603840.1-203ENST00000424357 645 ntTSL 3 BASIC5.96□□□□□ -1.46
HDDC3Q8N4P3 MAGI2-AS1-201ENST00000428298 472 ntTSL 3 BASIC5.96□□□□□ -1.46
HDDC3Q8N4P3 AL162727.2-201ENST00000428429 395 ntTSL 3 BASIC5.96□□□□□ -1.46
HDDC3Q8N4P3 OR6C71P-201ENST00000432580 913 ntBASIC5.96□□□□□ -1.46
HDDC3Q8N4P3 AC079922.1-201ENST00000443291 359 ntBASIC5.96□□□□□ -1.46
HDDC3Q8N4P3 AC006482.1-201ENST00000448898 273 ntTSL 3 BASIC5.96□□□□□ -1.46
HDDC3Q8N4P3 AC078828.1-201ENST00000471993 458 ntTSL 3 BASIC5.96□□□□□ -1.46
HDDC3Q8N4P3 ST20-201ENST00000478497 1004 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
HDDC3Q8N4P3 AC012123.2-201ENST00000485809 248 ntBASIC5.96□□□□□ -1.46
HDDC3Q8N4P3 AC124893.1-201ENST00000496247 545 ntTSL 5 BASIC5.96□□□□□ -1.46
HDDC3Q8N4P3 SPTSSB-202ENST00000497137 880 ntAPPRIS P1 TSL 3 BASIC5.96□□□□□ -1.46
HDDC3Q8N4P3 AC094108.1-201ENST00000502494 527 ntTSL 3 BASIC5.96□□□□□ -1.46
HDDC3Q8N4P3 SUMO2P19-201ENST00000518920 295 ntBASIC5.96□□□□□ -1.46
HDDC3Q8N4P3 AP006245.2-201ENST00000522004 300 ntBASIC5.96□□□□□ -1.46
HDDC3Q8N4P3 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC5.96□□□□□ -1.46
HDDC3Q8N4P3 AC044860.2-201ENST00000561005 179 ntBASIC5.96□□□□□ -1.46
HDDC3Q8N4P3 AC136944.1-201ENST00000567464 560 ntTSL 5 BASIC5.96□□□□□ -1.46
HDDC3Q8N4P3 AC007431.2-201ENST00000577189 563 ntTSL 2 BASIC5.96□□□□□ -1.46
HDDC3Q8N4P3 AC010761.5-201ENST00000579468 287 ntTSL 3 BASIC5.96□□□□□ -1.46
HDDC3Q8N4P3 Z98949.1-203ENST00000597284 851 ntTSL 5 BASIC5.96□□□□□ -1.46
HDDC3Q8N4P3 SNORA35B-201ENST00000607417 129 ntBASIC5.96□□□□□ -1.46
HDDC3Q8N4P3 AC015574.1-205ENST00000611285 524 ntTSL 5 BASIC5.96□□□□□ -1.46
HDDC3Q8N4P3 LINC02246-206ENST00000630211 712 ntTSL 5 BASIC5.96□□□□□ -1.46
HDDC3Q8N4P3 ZNF208-201ENST00000397126 3992 ntAPPRIS P1 TSL 3 BASIC5.96□□□□□ -1.46
HDDC3Q8N4P3 TTC41P-205ENST00000551270 3963 ntBASIC5.96□□□□□ -1.46
HDDC3Q8N4P3 GRIK1-201ENST00000327783 3179 ntTSL 5 BASIC5.96□□□□□ -1.46
HDDC3Q8N4P3 PPFIBP1-201ENST00000228425 5933 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
HDDC3Q8N4P3 CYBB-201ENST00000378588 4324 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
HDDC3Q8N4P3 CEACAMP10-201ENST00000489959 1721 ntTSL 2 BASIC5.96□□□□□ -1.46
HDDC3Q8N4P3 TMEM257-201ENST00000408967 2441 ntAPPRIS P1 BASIC5.96□□□□□ -1.46
HDDC3Q8N4P3 FBXO25-204ENST00000382824 10386 ntAPPRIS P4 TSL 1 (best) BASIC5.96□□□□□ -1.46
HDDC3Q8N4P3 AC117409.1-201ENST00000470499 1310 ntBASIC5.96□□□□□ -1.46
HDDC3Q8N4P3 AC007159.1-201ENST00000566529 4706 ntBASIC5.96□□□□□ -1.46
HDDC3Q8N4P3 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC5.95□□□□□ -1.46
HDDC3Q8N4P3 NOVA1-206ENST00000539517 3912 ntAPPRIS P4 TSL 1 (best) BASIC5.95□□□□□ -1.46
HDDC3Q8N4P3 AL591135.1-201ENST00000401578 5914 ntBASIC5.95□□□□□ -1.46
HDDC3Q8N4P3 LINC00700-201ENST00000413603 2097 ntTSL 2 BASIC5.95□□□□□ -1.46
HDDC3Q8N4P3 LINC01504-201ENST00000436054 2078 ntTSL 2 BASIC5.95□□□□□ -1.46
HDDC3Q8N4P3 AP002004.1-201ENST00000532510 3530 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
HDDC3Q8N4P3 OR10A6-204ENST00000642108 6104 ntAPPRIS P1 BASIC5.95□□□□□ -1.46
HDDC3Q8N4P3 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC5.95□□□□□ -1.46
HDDC3Q8N4P3 C17orf78-203ENST00000611038 1675 ntAPPRIS ALT2 TSL 2 BASIC5.95□□□□□ -1.46
HDDC3Q8N4P3 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
HDDC3Q8N4P3 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC5.95□□□□□ -1.46
HDDC3Q8N4P3 CHRDL1-202ENST00000372045 3860 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
HDDC3Q8N4P3 UGP2-203ENST00000445915 1955 ntTSL 2 BASIC5.95□□□□□ -1.46
HDDC3Q8N4P3 AADAT-202ENST00000353187 2101 ntAPPRIS P3 TSL 2 BASIC5.95□□□□□ -1.46
HDDC3Q8N4P3 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
HDDC3Q8N4P3 ZNF283-203ENST00000588797 2428 ntTSL 2 BASIC5.95□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 105.9 ms