Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 MSL3P1-202ENST00000440028 1468 ntBASIC5.91□□□□□ -1.46
COL28A1Q2UY09 OR10A6-204ENST00000642108 6104 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
COL28A1Q2UY09 AC093909.5-201ENST00000621839 1799 ntBASIC5.91□□□□□ -1.46
COL28A1Q2UY09 VPS13B-203ENST00000358544 14094 ntAPPRIS P4 TSL 1 (best) BASIC5.91□□□□□ -1.46
COL28A1Q2UY09 AP002004.1-201ENST00000532510 3530 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
COL28A1Q2UY09 AC019080.1-201ENST00000397057 5202 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
COL28A1Q2UY09 FAM32BP-201ENST00000344033 333 ntBASIC5.91□□□□□ -1.46
COL28A1Q2UY09 RNA5SP346-201ENST00000363541 121 ntBASIC5.91□□□□□ -1.46
COL28A1Q2UY09 AL050335.1-201ENST00000396909 869 ntBASIC5.91□□□□□ -1.46
COL28A1Q2UY09 VN1R31P-201ENST00000417498 730 ntBASIC5.91□□□□□ -1.46
COL28A1Q2UY09 NME1P1-201ENST00000420914 382 ntBASIC5.91□□□□□ -1.46
COL28A1Q2UY09 RPS15AP29-201ENST00000445539 400 ntBASIC5.91□□□□□ -1.46
COL28A1Q2UY09 MGAT2P1-201ENST00000449718 797 ntBASIC5.91□□□□□ -1.46
COL28A1Q2UY09 CBX1P2-201ENST00000453841 458 ntBASIC5.91□□□□□ -1.46
COL28A1Q2UY09 RN7SL643P-201ENST00000471845 291 ntBASIC5.91□□□□□ -1.46
COL28A1Q2UY09 AC092824.1-201ENST00000483524 576 ntBASIC5.91□□□□□ -1.46
COL28A1Q2UY09 CR383656.1-201ENST00000484916 377 ntBASIC5.91□□□□□ -1.46
COL28A1Q2UY09 OR9N1P-201ENST00000491296 333 ntBASIC5.91□□□□□ -1.46
COL28A1Q2UY09 LINC02360-201ENST00000506195 657 ntTSL 3 BASIC5.91□□□□□ -1.46
COL28A1Q2UY09 SCARNA18.1-201ENST00000516330 83 ntBASIC5.91□□□□□ -1.46
COL28A1Q2UY09 KCTD21-AS1-203ENST00000527321 586 ntTSL 3 BASIC5.91□□□□□ -1.46
COL28A1Q2UY09 OR5AP2-201ENST00000544374 1006 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
COL28A1Q2UY09 AL163195.3-202ENST00000555283 578 ntAPPRIS P1 TSL 4 BASIC5.91□□□□□ -1.46
COL28A1Q2UY09 AC022523.1-201ENST00000560360 364 ntTSL 5 BASIC5.91□□□□□ -1.46
COL28A1Q2UY09 CAPN3-210ENST00000561817 915 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
COL28A1Q2UY09 AC135050.4-201ENST00000568708 504 ntTSL 5 BASIC5.91□□□□□ -1.46
COL28A1Q2UY09 LINC01908-201ENST00000583148 555 ntTSL 4 BASIC5.91□□□□□ -1.46
COL28A1Q2UY09 LY86-AS1-206ENST00000607278 677 ntTSL 3 BASIC5.91□□□□□ -1.46
COL28A1Q2UY09 AC084036.1-201ENST00000609190 508 ntBASIC5.91□□□□□ -1.46
COL28A1Q2UY09 Mico1.1-201ENST00000611698 204 ntBASIC5.91□□□□□ -1.46
COL28A1Q2UY09 AL731566.2-201ENST00000618971 317 ntBASIC5.91□□□□□ -1.46
COL28A1Q2UY09 AL162233.1-201ENST00000620014 944 ntBASIC5.91□□□□□ -1.46
COL28A1Q2UY09 AL691477.1-201ENST00000624398 162 ntBASIC5.91□□□□□ -1.46
COL28A1Q2UY09 AP003400.6-201ENST00000624698 740 ntBASIC5.91□□□□□ -1.46
COL28A1Q2UY09 AC099329.1-203ENST00000629885 767 ntTSL 5 BASIC5.91□□□□□ -1.46
COL28A1Q2UY09 AL132640.3-201ENST00000630473 177 ntBASIC5.91□□□□□ -1.46
COL28A1Q2UY09 AC119674.1-220ENST00000641502 1048 ntBASIC5.91□□□□□ -1.46
COL28A1Q2UY09 SAMMSON-227ENST00000642114 1199 ntBASIC5.91□□□□□ -1.46
COL28A1Q2UY09 PGM3-215ENST00000616566 5905 ntTSL 2 BASIC5.91□□□□□ -1.46
COL28A1Q2UY09 TYW3-203ENST00000457880 3335 ntTSL 2 BASIC5.91□□□□□ -1.46
COL28A1Q2UY09 SLC2A14-221ENST00000616981 3366 ntAPPRIS P3 TSL 5 BASIC5.91□□□□□ -1.46
COL28A1Q2UY09 AC235565.1-201ENST00000456962 1325 ntBASIC5.91□□□□□ -1.46
COL28A1Q2UY09 SAGE3P-201ENST00000619800 1635 ntBASIC5.91□□□□□ -1.46
COL28A1Q2UY09 AC087565.3-202ENST00000642085 1603 ntBASIC5.91□□□□□ -1.46
COL28A1Q2UY09 CLMN-201ENST00000298912 12747 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
COL28A1Q2UY09 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC5.91□□□□□ -1.46
COL28A1Q2UY09 HHLA1-201ENST00000414222 4105 ntAPPRIS ALT2 TSL 5 BASIC5.91□□□□□ -1.46
COL28A1Q2UY09 AL359976.1-201ENST00000418655 3528 ntBASIC5.91□□□□□ -1.46
COL28A1Q2UY09 CHN1-204ENST00000409597 1445 ntTSL 3 BASIC5.91□□□□□ -1.46
COL28A1Q2UY09 BRIP1-201ENST00000259008 6048 ntAPPRIS P2 TSL 1 (best) BASIC5.9□□□□□ -1.46
COL28A1Q2UY09 ADAM20-201ENST00000256389 2795 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
COL28A1Q2UY09 ZNF836-201ENST00000322146 2811 ntAPPRIS ALT2 TSL 5 BASIC5.9□□□□□ -1.46
COL28A1Q2UY09 LINC02261-201ENST00000512873 2802 ntTSL 2 BASIC5.9□□□□□ -1.46
COL28A1Q2UY09 GCNT2-201ENST00000265012 4214 ntAPPRIS P3 TSL 1 (best) BASIC5.9□□□□□ -1.46
COL28A1Q2UY09 AL590763.1-201ENST00000398297 1545 ntBASIC5.9□□□□□ -1.46
COL28A1Q2UY09 ZNF528-201ENST00000360465 3978 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
COL28A1Q2UY09 AF287957.1-201ENST00000607368 1595 ntBASIC5.9□□□□□ -1.46
COL28A1Q2UY09 SEM1-202ENST00000356686 2667 ntTSL 5 BASIC5.9□□□□□ -1.46
COL28A1Q2UY09 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
COL28A1Q2UY09 TCF7L2-210ENST00000369397 3802 ntAPPRIS P3 TSL 1 (best) BASIC5.9□□□□□ -1.46
COL28A1Q2UY09 RNU11-201ENST00000387069 134 ntBASIC5.9□□□□□ -1.46
COL28A1Q2UY09 SNORA11-201ENST00000408789 128 ntBASIC5.9□□□□□ -1.46
COL28A1Q2UY09 RN7SKP279-201ENST00000411383 298 ntBASIC5.9□□□□□ -1.46
COL28A1Q2UY09 LINC01820-201ENST00000418415 570 ntTSL 2 BASIC5.9□□□□□ -1.46
COL28A1Q2UY09 MED28P4-201ENST00000433137 572 ntBASIC5.9□□□□□ -1.46
COL28A1Q2UY09 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC5.9□□□□□ -1.46
COL28A1Q2UY09 AL606490.8-201ENST00000441624 319 ntBASIC5.9□□□□□ -1.46
COL28A1Q2UY09 AL139121.1-201ENST00000445647 244 ntTSL 2 BASIC5.9□□□□□ -1.46
COL28A1Q2UY09 AC005077.1-201ENST00000449226 375 ntBASIC5.9□□□□□ -1.46
COL28A1Q2UY09 AC002553.3-201ENST00000453002 341 ntBASIC5.9□□□□□ -1.46
COL28A1Q2UY09 AC108161.1-201ENST00000461060 402 ntBASIC5.9□□□□□ -1.46
COL28A1Q2UY09 AL049829.1-201ENST00000465411 156 ntBASIC5.9□□□□□ -1.46
COL28A1Q2UY09 AL133445.1-201ENST00000467051 452 ntBASIC5.9□□□□□ -1.46
COL28A1Q2UY09 RPL34P33-201ENST00000486062 334 ntBASIC5.9□□□□□ -1.46
COL28A1Q2UY09 RWDD4P1-201ENST00000488019 565 ntBASIC5.9□□□□□ -1.46
COL28A1Q2UY09 MOSPD2-206ENST00000497603 775 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
COL28A1Q2UY09 AC006499.3-201ENST00000506077 748 ntBASIC5.9□□□□□ -1.46
COL28A1Q2UY09 CYCSP22-201ENST00000517555 339 ntBASIC5.9□□□□□ -1.46
COL28A1Q2UY09 PKIA-AS1-201ENST00000519242 995 ntTSL 5 BASIC5.9□□□□□ -1.46
COL28A1Q2UY09 OR8K2P-201ENST00000524645 927 ntBASIC5.9□□□□□ -1.46
COL28A1Q2UY09 OR10D4P-201ENST00000525892 951 ntBASIC5.9□□□□□ -1.46
COL28A1Q2UY09 MRE11-209ENST00000540013 1212 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
COL28A1Q2UY09 LINC00871-202ENST00000556071 554 ntTSL 3 BASIC5.9□□□□□ -1.46
COL28A1Q2UY09 LINC00871-204ENST00000556886 866 ntTSL 3 BASIC5.9□□□□□ -1.46
COL28A1Q2UY09 AP001007.3-201ENST00000560744 356 ntTSL 5 BASIC5.9□□□□□ -1.46
COL28A1Q2UY09 TMEM202-202ENST00000567679 588 ntAPPRIS ALT2 TSL 2 BASIC5.9□□□□□ -1.46
COL28A1Q2UY09 AC093330.1-201ENST00000583326 568 ntTSL 4 BASIC5.9□□□□□ -1.46
COL28A1Q2UY09 GMFG-212ENST00000602185 423 ntTSL 3 BASIC5.9□□□□□ -1.46
COL28A1Q2UY09 AL360012.1-201ENST00000602813 131 ntBASIC5.9□□□□□ -1.46
COL28A1Q2UY09 Metazoa_SRP.94-201ENST00000612609 250 ntBASIC5.9□□□□□ -1.46
COL28A1Q2UY09 AL391425.1-202ENST00000617518 774 ntTSL 5 BASIC5.9□□□□□ -1.46
COL28A1Q2UY09 AC103798.2-201ENST00000624292 632 ntBASIC5.9□□□□□ -1.46
COL28A1Q2UY09 AC116667.2-201ENST00000641075 823 ntBASIC5.9□□□□□ -1.46
COL28A1Q2UY09 KCNJ2-201ENST00000243457 5392 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
COL28A1Q2UY09 LINC01741-201ENST00000427173 1666 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
COL28A1Q2UY09 AC090220.1-201ENST00000593078 1699 ntBASIC5.9□□□□□ -1.47
COL28A1Q2UY09 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
COL28A1Q2UY09 MTND4P21-201ENST00000453886 1357 ntBASIC5.9□□□□□ -1.47
COL28A1Q2UY09 FGL2-201ENST00000248598 4261 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
COL28A1Q2UY09 CTDSPL2-204ENST00000558966 1895 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 73.4 ms