Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 CLEC4D-201ENST00000299665 1936 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
COL18A1P39060 NAV2-202ENST00000360655 10667 ntAPPRIS ALT2 TSL 1 (best) BASIC7.19□□□□□ -1.26
COL18A1P39060 ZNF337-AS1-201ENST00000414393 4666 ntTSL 2 BASIC7.19□□□□□ -1.26
COL18A1P39060 ZNF451-204ENST00000370708 9478 ntTSL 2 BASIC7.19□□□□□ -1.26
COL18A1P39060 CUZD1-205ENST00000368904 2903 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
COL18A1P39060 NRXN3-203ENST00000428277 4219 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
COL18A1P39060 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC7.19□□□□□ -1.26
COL18A1P39060 TMPRSS15-201ENST00000284885 3947 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
COL18A1P39060 SLFN13-204ENST00000526861 6004 ntAPPRIS P1 TSL 5 BASIC7.18□□□□□ -1.26
COL18A1P39060 CA5B-201ENST00000318636 6835 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
COL18A1P39060 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
COL18A1P39060 AC096921.1-201ENST00000411661 375 ntBASIC7.18□□□□□ -1.26
COL18A1P39060 DDX39BP1-205ENST00000422507 192 ntBASIC7.18□□□□□ -1.26
COL18A1P39060 Z92846.1-201ENST00000456203 268 ntBASIC7.18□□□□□ -1.26
COL18A1P39060 AC096741.1-201ENST00000472250 846 ntBASIC7.18□□□□□ -1.26
COL18A1P39060 ST13P12-201ENST00000508958 1094 ntBASIC7.18□□□□□ -1.26
COL18A1P39060 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC7.18□□□□□ -1.26
COL18A1P39060 PCNPP1-201ENST00000552501 511 ntBASIC7.18□□□□□ -1.26
COL18A1P39060 AC079075.1-201ENST00000559543 878 ntBASIC7.18□□□□□ -1.26
COL18A1P39060 AC009117.1-201ENST00000563948 554 ntBASIC7.18□□□□□ -1.26
COL18A1P39060 DARS-AS1-211ENST00000595061 720 ntTSL 5 BASIC7.18□□□□□ -1.26
COL18A1P39060 LINC01587-204ENST00000623565 873 ntTSL 2 BASIC7.18□□□□□ -1.26
COL18A1P39060 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC7.18□□□□□ -1.26
COL18A1P39060 MMACHC-201ENST00000401061 5296 ntAPPRIS P1 TSL 2 BASIC7.18□□□□□ -1.26
COL18A1P39060 POLR1D-218ENST00000636817 4592 ntTSL 5 BASIC7.18□□□□□ -1.26
COL18A1P39060 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC7.18□□□□□ -1.26
COL18A1P39060 AC022819.1-201ENST00000563495 3910 ntBASIC7.18□□□□□ -1.26
COL18A1P39060 ANKS1B-216ENST00000549558 2268 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
COL18A1P39060 SPTAN1-222ENST00000630804 7812 ntTSL 5 BASIC7.18□□□□□ -1.26
COL18A1P39060 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
COL18A1P39060 RUNX1T1-249ENST00000613886 7401 ntAPPRIS ALT1 TSL 5 BASIC7.18□□□□□ -1.26
COL18A1P39060 LIN28B-201ENST00000345080 5505 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
COL18A1P39060 TNFSF4-201ENST00000281834 3470 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
COL18A1P39060 SCUBE3-201ENST00000274938 7356 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
COL18A1P39060 LUC7L2-201ENST00000263545 2287 ntTSL 5 BASIC7.18□□□□□ -1.26
COL18A1P39060 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
COL18A1P39060 KIAA1217-204ENST00000376454 7381 ntAPPRIS P3 TSL 1 (best) BASIC7.18□□□□□ -1.26
COL18A1P39060 AC018765.1-201ENST00000623357 3446 ntBASIC7.18□□□□□ -1.26
COL18A1P39060 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC7.18□□□□□ -1.26
COL18A1P39060 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC7.18□□□□□ -1.26
COL18A1P39060 RNU1-136P-201ENST00000384181 164 ntBASIC7.18□□□□□ -1.26
COL18A1P39060 TEX41-205ENST00000431734 529 ntTSL 4 BASIC7.18□□□□□ -1.26
COL18A1P39060 RPL34P20-201ENST00000442771 351 ntBASIC7.18□□□□□ -1.26
COL18A1P39060 VN1R5-201ENST00000472952 1239 ntAPPRIS P1 BASIC7.18□□□□□ -1.26
COL18A1P39060 AC079080.1-201ENST00000479841 822 ntBASIC7.18□□□□□ -1.26
COL18A1P39060 MOCS2-205ENST00000508922 1210 ntTSL 5 BASIC7.18□□□□□ -1.26
COL18A1P39060 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC7.18□□□□□ -1.26
COL18A1P39060 AC020551.1-201ENST00000512036 539 ntTSL 3 BASIC7.18□□□□□ -1.26
COL18A1P39060 MOCS2-209ENST00000582677 741 ntTSL 5 BASIC7.18□□□□□ -1.26
COL18A1P39060 AP005432.2-201ENST00000608162 586 ntBASIC7.18□□□□□ -1.26
COL18A1P39060 AC015660.5-201ENST00000623238 564 ntBASIC7.18□□□□□ -1.26
COL18A1P39060 FRYL-210ENST00000507711 5277 ntTSL 2 BASIC7.18□□□□□ -1.26
COL18A1P39060 PSMC6-219ENST00000612399 1590 ntAPPRIS P2 TSL 1 (best) BASIC7.18□□□□□ -1.26
COL18A1P39060 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
COL18A1P39060 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC7.18□□□□□ -1.26
COL18A1P39060 MAPK10-263ENST00000641052 4307 ntBASIC7.17□□□□□ -1.26
COL18A1P39060 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
COL18A1P39060 KIAA0391-201ENST00000250377 6118 ntTSL 2 BASIC7.17□□□□□ -1.26
COL18A1P39060 FANCD2-201ENST00000287647 5219 ntAPPRIS P3 TSL 1 (best) BASIC7.17□□□□□ -1.26
COL18A1P39060 CTNND1-203ENST00000361391 6232 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
COL18A1P39060 HLTF-203ENST00000465259 5306 ntAPPRIS ALT1 TSL 1 (best) BASIC7.17□□□□□ -1.26
COL18A1P39060 AC005725.1-201ENST00000577346 2607 ntBASIC7.17□□□□□ -1.26
COL18A1P39060 TMED8-201ENST00000216468 7784 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
COL18A1P39060 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
COL18A1P39060 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
COL18A1P39060 AL121977.1-201ENST00000401636 979 ntBASIC7.17□□□□□ -1.26
COL18A1P39060 AL009179.1-201ENST00000406085 265 ntBASIC7.17□□□□□ -1.26
COL18A1P39060 AL049745.1-201ENST00000433953 286 ntBASIC7.17□□□□□ -1.26
COL18A1P39060 AC006466.1-201ENST00000438721 289 ntBASIC7.17□□□□□ -1.26
COL18A1P39060 AC104634.1-201ENST00000452720 462 ntBASIC7.17□□□□□ -1.26
COL18A1P39060 RN7SL738P-201ENST00000470264 297 ntBASIC7.17□□□□□ -1.26
COL18A1P39060 UBE2Q2P10-201ENST00000514854 900 ntBASIC7.17□□□□□ -1.26
COL18A1P39060 MIR3934-201ENST00000579806 107 ntBASIC7.17□□□□□ -1.26
COL18A1P39060 AC209154.1-201ENST00000582156 337 ntBASIC7.17□□□□□ -1.26
COL18A1P39060 AC234771.5-201ENST00000600161 514 ntBASIC7.17□□□□□ -1.26
COL18A1P39060 AF230666.2-201ENST00000602328 725 ntBASIC7.17□□□□□ -1.26
COL18A1P39060 AL353662.3-201ENST00000625131 237 ntBASIC7.17□□□□□ -1.26
COL18A1P39060 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC7.17□□□□□ -1.26
COL18A1P39060 API5-210ENST00000534600 1760 ntTSL 5 BASIC7.17□□□□□ -1.26
COL18A1P39060 KIAA2012-204ENST00000498697 3772 ntAPPRIS ALT2 TSL 5 BASIC7.17□□□□□ -1.26
COL18A1P39060 AC140479.2-201ENST00000421567 3130 ntBASIC7.17□□□□□ -1.26
COL18A1P39060 AC092747.4-201ENST00000620519 1861 ntBASIC7.17□□□□□ -1.26
COL18A1P39060 RPL14-201ENST00000338970 7072 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
COL18A1P39060 AL353796.1-201ENST00000561542 3241 ntBASIC7.16□□□□□ -1.26
COL18A1P39060 OR9K1P-202ENST00000641111 3217 ntBASIC7.16□□□□□ -1.26
COL18A1P39060 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
COL18A1P39060 SF3B1-201ENST00000335508 6526 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
COL18A1P39060 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC7.16□□□□□ -1.26
COL18A1P39060 MAP3K20-201ENST00000338983 7179 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
COL18A1P39060 POGK-201ENST00000367875 6254 ntAPPRIS P1 TSL 5 BASIC7.16□□□□□ -1.26
COL18A1P39060 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC7.16□□□□□ -1.26
COL18A1P39060 SMIM2-IT1-201ENST00000415082 478 ntTSL 3 BASIC7.16□□□□□ -1.26
COL18A1P39060 MGAT2P2-201ENST00000427194 797 ntBASIC7.16□□□□□ -1.26
COL18A1P39060 ARPP21-218ENST00000438071 1103 ntTSL 3 BASIC7.16□□□□□ -1.26
COL18A1P39060 GYG1P1-201ENST00000460864 698 ntBASIC7.16□□□□□ -1.26
COL18A1P39060 LINC02083-201ENST00000462835 515 ntTSL 3 BASIC7.16□□□□□ -1.26
COL18A1P39060 RPL7P16-201ENST00000479738 738 ntBASIC7.16□□□□□ -1.26
COL18A1P39060 RPL17P2-201ENST00000491913 451 ntBASIC7.16□□□□□ -1.26
COL18A1P39060 ZFAND1-208ENST00000519523 698 ntTSL 2 BASIC7.16□□□□□ -1.26
COL18A1P39060 BNIP3P1-201ENST00000547295 580 ntBASIC7.16□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 123.6 ms