Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VPS4AQ9UN37 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC19■□□□□ 0.63
VPS4AQ9UN37 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC19■□□□□ 0.63
VPS4AQ9UN37 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
VPS4AQ9UN37 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.99■□□□□ 0.63
VPS4AQ9UN37 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VPS4AQ9UN37 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
VPS4AQ9UN37 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC18.99■□□□□ 0.63
VPS4AQ9UN37 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
VPS4AQ9UN37 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
VPS4AQ9UN37 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
VPS4AQ9UN37 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
VPS4AQ9UN37 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VPS4AQ9UN37 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VPS4AQ9UN37 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
VPS4AQ9UN37 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC18.99■□□□□ 0.63
VPS4AQ9UN37 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC18.99■□□□□ 0.63
VPS4AQ9UN37 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC18.99■□□□□ 0.63
VPS4AQ9UN37 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC18.99■□□□□ 0.63
VPS4AQ9UN37 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC18.99■□□□□ 0.63
VPS4AQ9UN37 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC18.99■□□□□ 0.63
VPS4AQ9UN37 LINC01023-201ENST00000606054 436 ntBASIC18.99■□□□□ 0.63
VPS4AQ9UN37 AC010331.1-201ENST00000611423 582 ntBASIC18.99■□□□□ 0.63
VPS4AQ9UN37 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC18.99■□□□□ 0.63
VPS4AQ9UN37 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC18.99■□□□□ 0.63
VPS4AQ9UN37 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
VPS4AQ9UN37 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VPS4AQ9UN37 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VPS4AQ9UN37 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
VPS4AQ9UN37 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
VPS4AQ9UN37 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC18.99■□□□□ 0.63
VPS4AQ9UN37 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VPS4AQ9UN37 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
VPS4AQ9UN37 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC18.99■□□□□ 0.63
VPS4AQ9UN37 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
VPS4AQ9UN37 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VPS4AQ9UN37 H19-201ENST00000411754 1788 ntTSL 5 BASIC18.98■□□□□ 0.63
VPS4AQ9UN37 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
VPS4AQ9UN37 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS4AQ9UN37 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS4AQ9UN37 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
VPS4AQ9UN37 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC18.98■□□□□ 0.63
VPS4AQ9UN37 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC18.98■□□□□ 0.63
VPS4AQ9UN37 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC18.98■□□□□ 0.63
VPS4AQ9UN37 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS4AQ9UN37 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
VPS4AQ9UN37 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS4AQ9UN37 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC18.98■□□□□ 0.63
VPS4AQ9UN37 AC211429.1-201ENST00000415277 523 ntBASIC18.98■□□□□ 0.63
VPS4AQ9UN37 KRT17P3-201ENST00000420566 1262 ntBASIC18.98■□□□□ 0.63
VPS4AQ9UN37 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
VPS4AQ9UN37 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC18.98■□□□□ 0.63
VPS4AQ9UN37 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC18.98■□□□□ 0.63
VPS4AQ9UN37 RPPH1-201ENST00000516869 333 ntBASIC18.98■□□□□ 0.63
VPS4AQ9UN37 RNF121-214ENST00000533380 870 ntTSL 3 BASIC18.98■□□□□ 0.63
VPS4AQ9UN37 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC18.98■□□□□ 0.63
VPS4AQ9UN37 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC18.98■□□□□ 0.63
VPS4AQ9UN37 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC18.98■□□□□ 0.63
VPS4AQ9UN37 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS4AQ9UN37 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS4AQ9UN37 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS4AQ9UN37 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC18.98■□□□□ 0.63
VPS4AQ9UN37 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS4AQ9UN37 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS4AQ9UN37 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS4AQ9UN37 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS4AQ9UN37 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
VPS4AQ9UN37 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS4AQ9UN37 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC18.98■□□□□ 0.63
VPS4AQ9UN37 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
VPS4AQ9UN37 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
VPS4AQ9UN37 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS4AQ9UN37 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS4AQ9UN37 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS4AQ9UN37 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
VPS4AQ9UN37 TMEM179-206ENST00000616017 1645 ntBASIC18.97■□□□□ 0.63
VPS4AQ9UN37 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS4AQ9UN37 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC18.97■□□□□ 0.63
VPS4AQ9UN37 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS4AQ9UN37 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC18.97■□□□□ 0.63
VPS4AQ9UN37 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC18.97■□□□□ 0.63
VPS4AQ9UN37 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC18.97■□□□□ 0.63
VPS4AQ9UN37 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC18.97■□□□□ 0.63
VPS4AQ9UN37 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
VPS4AQ9UN37 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC18.97■□□□□ 0.63
VPS4AQ9UN37 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS4AQ9UN37 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
VPS4AQ9UN37 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
VPS4AQ9UN37 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC18.97■□□□□ 0.63
VPS4AQ9UN37 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC18.97■□□□□ 0.63
VPS4AQ9UN37 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC18.97■□□□□ 0.63
VPS4AQ9UN37 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
VPS4AQ9UN37 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
VPS4AQ9UN37 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC18.97■□□□□ 0.63
VPS4AQ9UN37 CYP21A1P-202ENST00000354927 1481 ntBASIC18.97■□□□□ 0.63
VPS4AQ9UN37 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC18.97■□□□□ 0.63
VPS4AQ9UN37 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS4AQ9UN37 AL691432.2-201ENST00000607222 2038 ntBASIC18.96■□□□□ 0.63
VPS4AQ9UN37 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
VPS4AQ9UN37 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms