Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC17.52■□□□□ 0.39
CLCF1Q9UBD9 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC17.52■□□□□ 0.39
CLCF1Q9UBD9 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC17.52■□□□□ 0.39
CLCF1Q9UBD9 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLCF1Q9UBD9 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC17.51■□□□□ 0.39
CLCF1Q9UBD9 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLCF1Q9UBD9 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLCF1Q9UBD9 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLCF1Q9UBD9 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CLCF1Q9UBD9 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC17.51■□□□□ 0.39
CLCF1Q9UBD9 TUBB8P6-201ENST00000436895 1288 ntBASIC17.51■□□□□ 0.39
CLCF1Q9UBD9 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CLCF1Q9UBD9 TSPY15P-201ENST00000457163 923 ntBASIC17.51■□□□□ 0.39
CLCF1Q9UBD9 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC17.51■□□□□ 0.39
CLCF1Q9UBD9 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC17.51■□□□□ 0.39
CLCF1Q9UBD9 MOK-225ENST00000522867 1883 ntTSL 5 BASIC17.51■□□□□ 0.39
CLCF1Q9UBD9 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC17.51■□□□□ 0.39
CLCF1Q9UBD9 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC17.51■□□□□ 0.39
CLCF1Q9UBD9 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CLCF1Q9UBD9 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC17.51■□□□□ 0.39
CLCF1Q9UBD9 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLCF1Q9UBD9 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC17.51■□□□□ 0.39
CLCF1Q9UBD9 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLCF1Q9UBD9 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
CLCF1Q9UBD9 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC17.51■□□□□ 0.39
CLCF1Q9UBD9 AL162377.1-201ENST00000618844 1793 ntBASIC17.51■□□□□ 0.39
CLCF1Q9UBD9 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
CLCF1Q9UBD9 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CLCF1Q9UBD9 AP001271.2-201ENST00000624018 1556 ntBASIC17.5■□□□□ 0.39
CLCF1Q9UBD9 KRT16P1-201ENST00000399124 1418 ntBASIC17.5■□□□□ 0.39
CLCF1Q9UBD9 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC17.5■□□□□ 0.39
CLCF1Q9UBD9 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC17.5■□□□□ 0.39
CLCF1Q9UBD9 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLCF1Q9UBD9 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLCF1Q9UBD9 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
CLCF1Q9UBD9 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC17.5■□□□□ 0.39
CLCF1Q9UBD9 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLCF1Q9UBD9 NUDT16P1-203ENST00000513809 620 ntBASIC17.5■□□□□ 0.39
CLCF1Q9UBD9 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC17.5■□□□□ 0.39
CLCF1Q9UBD9 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC17.5■□□□□ 0.39
CLCF1Q9UBD9 DECR2-212ENST00000627716 352 ntTSL 2 BASIC17.5■□□□□ 0.39
CLCF1Q9UBD9 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CLCF1Q9UBD9 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLCF1Q9UBD9 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
CLCF1Q9UBD9 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC17.5■□□□□ 0.39
CLCF1Q9UBD9 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC17.5■□□□□ 0.39
CLCF1Q9UBD9 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CLCF1Q9UBD9 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLCF1Q9UBD9 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLCF1Q9UBD9 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLCF1Q9UBD9 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
CLCF1Q9UBD9 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC17.49■□□□□ 0.39
CLCF1Q9UBD9 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLCF1Q9UBD9 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLCF1Q9UBD9 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC17.49■□□□□ 0.39
CLCF1Q9UBD9 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC17.49■□□□□ 0.39
CLCF1Q9UBD9 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC17.49■□□□□ 0.39
CLCF1Q9UBD9 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC17.49■□□□□ 0.39
CLCF1Q9UBD9 RPS20-210ENST00000523936 899 ntTSL 2 BASIC17.49■□□□□ 0.39
CLCF1Q9UBD9 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC17.49■□□□□ 0.39
CLCF1Q9UBD9 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC17.49■□□□□ 0.39
CLCF1Q9UBD9 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC17.49■□□□□ 0.39
CLCF1Q9UBD9 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC17.49■□□□□ 0.39
CLCF1Q9UBD9 CR392000.1-201ENST00000624770 1228 ntBASIC17.49■□□□□ 0.39
CLCF1Q9UBD9 GOLGA2P11-201ENST00000562660 1621 ntBASIC17.49■□□□□ 0.39
CLCF1Q9UBD9 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLCF1Q9UBD9 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLCF1Q9UBD9 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLCF1Q9UBD9 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC17.48■□□□□ 0.39
CLCF1Q9UBD9 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLCF1Q9UBD9 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
CLCF1Q9UBD9 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CLCF1Q9UBD9 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC17.48■□□□□ 0.39
CLCF1Q9UBD9 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLCF1Q9UBD9 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC17.48■□□□□ 0.39
CLCF1Q9UBD9 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLCF1Q9UBD9 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC17.48■□□□□ 0.39
CLCF1Q9UBD9 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLCF1Q9UBD9 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC17.48■□□□□ 0.39
CLCF1Q9UBD9 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLCF1Q9UBD9 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLCF1Q9UBD9 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLCF1Q9UBD9 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLCF1Q9UBD9 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLCF1Q9UBD9 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC17.48■□□□□ 0.39
CLCF1Q9UBD9 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC17.48■□□□□ 0.39
CLCF1Q9UBD9 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC17.48■□□□□ 0.39
CLCF1Q9UBD9 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CLCF1Q9UBD9 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC17.48■□□□□ 0.39
CLCF1Q9UBD9 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC17.48■□□□□ 0.39
CLCF1Q9UBD9 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC17.48■□□□□ 0.39
CLCF1Q9UBD9 AL445675.2-201ENST00000620291 557 ntBASIC17.48■□□□□ 0.39
CLCF1Q9UBD9 REXO1L12P-201ENST00000622156 912 ntBASIC17.48■□□□□ 0.39
CLCF1Q9UBD9 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
CLCF1Q9UBD9 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CLCF1Q9UBD9 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLCF1Q9UBD9 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLCF1Q9UBD9 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC17.47■□□□□ 0.39
CLCF1Q9UBD9 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CLCF1Q9UBD9 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms