Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
USP29Q9HBJ7 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
USP29Q9HBJ7 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
USP29Q9HBJ7 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
USP29Q9HBJ7 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
USP29Q9HBJ7 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
USP29Q9HBJ7 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC20.25■□□□□ 0.83
USP29Q9HBJ7 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
USP29Q9HBJ7 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
USP29Q9HBJ7 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
USP29Q9HBJ7 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
USP29Q9HBJ7 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC20.25■□□□□ 0.83
USP29Q9HBJ7 NME6-213ENST00000451657 871 ntTSL 2 BASIC20.25■□□□□ 0.83
USP29Q9HBJ7 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
USP29Q9HBJ7 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC20.25■□□□□ 0.83
USP29Q9HBJ7 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
USP29Q9HBJ7 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
USP29Q9HBJ7 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
USP29Q9HBJ7 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
USP29Q9HBJ7 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC20.25■□□□□ 0.83
USP29Q9HBJ7 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC20.25■□□□□ 0.83
USP29Q9HBJ7 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
USP29Q9HBJ7 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
USP29Q9HBJ7 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC20.25■□□□□ 0.83
USP29Q9HBJ7 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC20.25■□□□□ 0.83
USP29Q9HBJ7 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
USP29Q9HBJ7 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
USP29Q9HBJ7 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
USP29Q9HBJ7 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC20.24■□□□□ 0.83
USP29Q9HBJ7 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
USP29Q9HBJ7 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
USP29Q9HBJ7 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
USP29Q9HBJ7 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
USP29Q9HBJ7 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
USP29Q9HBJ7 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
USP29Q9HBJ7 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
USP29Q9HBJ7 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC20.24■□□□□ 0.83
USP29Q9HBJ7 AC128676.1-201ENST00000454392 318 ntBASIC20.24■□□□□ 0.83
USP29Q9HBJ7 RPS2P52-201ENST00000469610 820 ntBASIC20.24■□□□□ 0.83
USP29Q9HBJ7 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC20.24■□□□□ 0.83
USP29Q9HBJ7 AP003097.1-201ENST00000530657 1135 ntBASIC20.24■□□□□ 0.83
USP29Q9HBJ7 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC20.24■□□□□ 0.83
USP29Q9HBJ7 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
USP29Q9HBJ7 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC20.24■□□□□ 0.83
USP29Q9HBJ7 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC20.24■□□□□ 0.83
USP29Q9HBJ7 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
USP29Q9HBJ7 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
USP29Q9HBJ7 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
USP29Q9HBJ7 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC20.24■□□□□ 0.83
USP29Q9HBJ7 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
USP29Q9HBJ7 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
USP29Q9HBJ7 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
USP29Q9HBJ7 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
USP29Q9HBJ7 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
USP29Q9HBJ7 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC20.23■□□□□ 0.83
USP29Q9HBJ7 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
USP29Q9HBJ7 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
USP29Q9HBJ7 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
USP29Q9HBJ7 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC20.23■□□□□ 0.83
USP29Q9HBJ7 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
USP29Q9HBJ7 AC018553.1-201ENST00000616682 1458 ntBASIC20.23■□□□□ 0.83
USP29Q9HBJ7 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
USP29Q9HBJ7 TP73-202ENST00000354437 2140 ntTSL 5 BASIC20.23■□□□□ 0.83
USP29Q9HBJ7 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC20.22■□□□□ 0.83
USP29Q9HBJ7 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
USP29Q9HBJ7 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
USP29Q9HBJ7 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC20.22■□□□□ 0.83
USP29Q9HBJ7 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
USP29Q9HBJ7 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC20.22■□□□□ 0.83
USP29Q9HBJ7 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
USP29Q9HBJ7 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
USP29Q9HBJ7 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC20.22■□□□□ 0.83
USP29Q9HBJ7 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC20.22■□□□□ 0.83
USP29Q9HBJ7 HES2-206ENST00000489730 730 ntTSL 2 BASIC20.22■□□□□ 0.83
USP29Q9HBJ7 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
USP29Q9HBJ7 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC20.22■□□□□ 0.83
USP29Q9HBJ7 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
USP29Q9HBJ7 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC20.22■□□□□ 0.83
USP29Q9HBJ7 MMD2-204ENST00000612910 778 ntTSL 5 BASIC20.22■□□□□ 0.83
USP29Q9HBJ7 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
USP29Q9HBJ7 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC20.22■□□□□ 0.83
USP29Q9HBJ7 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC20.22■□□□□ 0.83
USP29Q9HBJ7 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC20.22■□□□□ 0.83
USP29Q9HBJ7 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC20.21■□□□□ 0.83
USP29Q9HBJ7 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
USP29Q9HBJ7 AC116351.2-201ENST00000606540 1585 ntBASIC20.21■□□□□ 0.83
USP29Q9HBJ7 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
USP29Q9HBJ7 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
USP29Q9HBJ7 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
USP29Q9HBJ7 MFF-205ENST00000354503 1085 ntTSL 2 BASIC20.21■□□□□ 0.83
USP29Q9HBJ7 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC20.21■□□□□ 0.83
USP29Q9HBJ7 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC20.21■□□□□ 0.83
USP29Q9HBJ7 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
USP29Q9HBJ7 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
USP29Q9HBJ7 GATS-209ENST00000454084 1030 ntTSL 3 BASIC20.21■□□□□ 0.83
USP29Q9HBJ7 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
USP29Q9HBJ7 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC20.21■□□□□ 0.83
USP29Q9HBJ7 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC20.21■□□□□ 0.83
USP29Q9HBJ7 AC142381.4-202ENST00000563973 229 ntBASIC20.21■□□□□ 0.83
USP29Q9HBJ7 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC20.21■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms