Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LIME1Q9H400 PGM5P4-201ENST00000421970 445 ntBASIC17.28■□□□□ 0.36
LIME1Q9H400 RBM17P1-201ENST00000453646 1190 ntBASIC17.28■□□□□ 0.36
LIME1Q9H400 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
LIME1Q9H400 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC17.28■□□□□ 0.36
LIME1Q9H400 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC17.28■□□□□ 0.36
LIME1Q9H400 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC17.28■□□□□ 0.36
LIME1Q9H400 AP000525.1-201ENST00000608286 694 ntBASIC17.28■□□□□ 0.36
LIME1Q9H400 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC17.28■□□□□ 0.36
LIME1Q9H400 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIME1Q9H400 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC17.28■□□□□ 0.36
LIME1Q9H400 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC17.28■□□□□ 0.36
LIME1Q9H400 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
LIME1Q9H400 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC17.28■□□□□ 0.36
LIME1Q9H400 USP39-204ENST00000409766 2033 ntTSL 2 BASIC17.28■□□□□ 0.36
LIME1Q9H400 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LIME1Q9H400 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIME1Q9H400 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LIME1Q9H400 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC17.27■□□□□ 0.36
LIME1Q9H400 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC17.27■□□□□ 0.36
LIME1Q9H400 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
LIME1Q9H400 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC17.27■□□□□ 0.36
LIME1Q9H400 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
LIME1Q9H400 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LIME1Q9H400 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LIME1Q9H400 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC17.27■□□□□ 0.36
LIME1Q9H400 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC17.27■□□□□ 0.36
LIME1Q9H400 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LIME1Q9H400 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
LIME1Q9H400 KRT16P5-201ENST00000455284 522 ntBASIC17.27■□□□□ 0.36
LIME1Q9H400 F2R-202ENST00000505600 442 ntTSL 2 BASIC17.27■□□□□ 0.36
LIME1Q9H400 TPM1-226ENST00000560959 925 ntTSL 2 BASIC17.27■□□□□ 0.36
LIME1Q9H400 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC17.27■□□□□ 0.36
LIME1Q9H400 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC17.27■□□□□ 0.36
LIME1Q9H400 RMI2-205ENST00000576027 818 ntTSL 2 BASIC17.27■□□□□ 0.36
LIME1Q9H400 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC17.27■□□□□ 0.36
LIME1Q9H400 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC17.27■□□□□ 0.36
LIME1Q9H400 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
LIME1Q9H400 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
LIME1Q9H400 STK25-205ENST00000405883 1904 ntTSL 2 BASIC17.27■□□□□ 0.35
LIME1Q9H400 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC17.27■□□□□ 0.35
LIME1Q9H400 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
LIME1Q9H400 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC17.27■□□□□ 0.35
LIME1Q9H400 FP700111.2-201ENST00000619190 1892 ntBASIC17.27■□□□□ 0.35
LIME1Q9H400 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC17.26■□□□□ 0.35
LIME1Q9H400 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIME1Q9H400 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIME1Q9H400 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LIME1Q9H400 SRI-203ENST00000419179 1307 ntTSL 2 BASIC17.26■□□□□ 0.35
LIME1Q9H400 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIME1Q9H400 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIME1Q9H400 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIME1Q9H400 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIME1Q9H400 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIME1Q9H400 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIME1Q9H400 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC17.26■□□□□ 0.35
LIME1Q9H400 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIME1Q9H400 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC17.26■□□□□ 0.35
LIME1Q9H400 RNF146-204ENST00000476956 884 ntTSL 2 BASIC17.26■□□□□ 0.35
LIME1Q9H400 FDX2-207ENST00000494368 584 ntTSL 4 BASIC17.26■□□□□ 0.35
LIME1Q9H400 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC17.26■□□□□ 0.35
LIME1Q9H400 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIME1Q9H400 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC17.26■□□□□ 0.35
LIME1Q9H400 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC17.26■□□□□ 0.35
LIME1Q9H400 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC17.26■□□□□ 0.35
LIME1Q9H400 DECR2-212ENST00000627716 352 ntTSL 2 BASIC17.26■□□□□ 0.35
LIME1Q9H400 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
LIME1Q9H400 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIME1Q9H400 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC17.26■□□□□ 0.35
LIME1Q9H400 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
LIME1Q9H400 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIME1Q9H400 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LIME1Q9H400 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIME1Q9H400 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIME1Q9H400 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIME1Q9H400 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC17.25■□□□□ 0.35
LIME1Q9H400 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC17.25■□□□□ 0.35
LIME1Q9H400 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC17.25■□□□□ 0.35
LIME1Q9H400 NBPF21P-201ENST00000425093 1451 ntBASIC17.25■□□□□ 0.35
LIME1Q9H400 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC17.25■□□□□ 0.35
LIME1Q9H400 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIME1Q9H400 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
LIME1Q9H400 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIME1Q9H400 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
LIME1Q9H400 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC17.25■□□□□ 0.35
LIME1Q9H400 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIME1Q9H400 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIME1Q9H400 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC17.25■□□□□ 0.35
LIME1Q9H400 BID-204ENST00000399767 2129 ntTSL 2 BASIC17.25■□□□□ 0.35
LIME1Q9H400 MIR1238-201ENST00000408483 83 ntBASIC17.25■□□□□ 0.35
LIME1Q9H400 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
LIME1Q9H400 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC17.25■□□□□ 0.35
LIME1Q9H400 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC17.25■□□□□ 0.35
LIME1Q9H400 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC17.25■□□□□ 0.35
LIME1Q9H400 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC17.25■□□□□ 0.35
LIME1Q9H400 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC17.25■□□□□ 0.35
LIME1Q9H400 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC17.25■□□□□ 0.35
LIME1Q9H400 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC17.25■□□□□ 0.35
LIME1Q9H400 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
LIME1Q9H400 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 81.9 ms