Protein–RNA interactions for Protein: Q9H0I3

CCDC113, Coiled-coil domain-containing protein 113, humanhuman

Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC113Q9H0I3 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC21.77■■□□□ 1.08
CCDC113Q9H0I3 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC21.77■■□□□ 1.08
CCDC113Q9H0I3 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC21.77■■□□□ 1.08
CCDC113Q9H0I3 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC113Q9H0I3 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC113Q9H0I3 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC21.77■■□□□ 1.07
CCDC113Q9H0I3 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC21.77■■□□□ 1.07
CCDC113Q9H0I3 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC113Q9H0I3 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC113Q9H0I3 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC113Q9H0I3 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC113Q9H0I3 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC113Q9H0I3 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC21.76■■□□□ 1.07
CCDC113Q9H0I3 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC113Q9H0I3 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC21.76■■□□□ 1.07
CCDC113Q9H0I3 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC113Q9H0I3 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC113Q9H0I3 SPIB-206ENST00000596074 847 ntTSL 2 BASIC21.76■■□□□ 1.07
CCDC113Q9H0I3 AC110285.5-201ENST00000611501 352 ntBASIC21.76■■□□□ 1.07
CCDC113Q9H0I3 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
CCDC113Q9H0I3 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC113Q9H0I3 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC113Q9H0I3 STK25-204ENST00000405585 1643 ntTSL 2 BASIC21.76■■□□□ 1.07
CCDC113Q9H0I3 MME-217ENST00000616757 1315 ntTSL 5 BASIC21.76■■□□□ 1.07
CCDC113Q9H0I3 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC21.76■■□□□ 1.07
CCDC113Q9H0I3 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC113Q9H0I3 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC113Q9H0I3 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC113Q9H0I3 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC113Q9H0I3 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC113Q9H0I3 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC21.75■■□□□ 1.07
CCDC113Q9H0I3 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC21.75■■□□□ 1.07
CCDC113Q9H0I3 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC21.75■■□□□ 1.07
CCDC113Q9H0I3 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
CCDC113Q9H0I3 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC21.75■■□□□ 1.07
CCDC113Q9H0I3 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC21.75■■□□□ 1.07
CCDC113Q9H0I3 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC21.75■■□□□ 1.07
CCDC113Q9H0I3 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC113Q9H0I3 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC113Q9H0I3 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
CCDC113Q9H0I3 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC21.75■■□□□ 1.07
CCDC113Q9H0I3 CD37-204ENST00000535669 1674 ntTSL 2 BASIC21.75■■□□□ 1.07
CCDC113Q9H0I3 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC113Q9H0I3 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC113Q9H0I3 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC21.75■■□□□ 1.07
CCDC113Q9H0I3 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC113Q9H0I3 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC113Q9H0I3 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC113Q9H0I3 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC113Q9H0I3 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC113Q9H0I3 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
CCDC113Q9H0I3 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC21.74■■□□□ 1.07
CCDC113Q9H0I3 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC21.74■■□□□ 1.07
CCDC113Q9H0I3 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC113Q9H0I3 F2R-202ENST00000505600 442 ntTSL 2 BASIC21.74■■□□□ 1.07
CCDC113Q9H0I3 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC21.74■■□□□ 1.07
CCDC113Q9H0I3 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC21.74■■□□□ 1.07
CCDC113Q9H0I3 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC113Q9H0I3 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC113Q9H0I3 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC113Q9H0I3 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC113Q9H0I3 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC21.74■■□□□ 1.07
CCDC113Q9H0I3 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC113Q9H0I3 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC21.74■■□□□ 1.07
CCDC113Q9H0I3 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC113Q9H0I3 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC21.73■■□□□ 1.07
CCDC113Q9H0I3 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CCDC113Q9H0I3 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC21.73■■□□□ 1.07
CCDC113Q9H0I3 PHGDH-210ENST00000641115 1638 ntBASIC21.73■■□□□ 1.07
CCDC113Q9H0I3 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
CCDC113Q9H0I3 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
CCDC113Q9H0I3 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CCDC113Q9H0I3 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CCDC113Q9H0I3 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC21.73■■□□□ 1.07
CCDC113Q9H0I3 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CCDC113Q9H0I3 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CCDC113Q9H0I3 AC018553.1-201ENST00000616682 1458 ntBASIC21.73■■□□□ 1.07
CCDC113Q9H0I3 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CCDC113Q9H0I3 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC21.73■■□□□ 1.07
CCDC113Q9H0I3 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC21.73■■□□□ 1.07
CCDC113Q9H0I3 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC21.73■■□□□ 1.07
CCDC113Q9H0I3 AC008550.1-201ENST00000511500 884 ntBASIC21.73■■□□□ 1.07
CCDC113Q9H0I3 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC21.73■■□□□ 1.07
CCDC113Q9H0I3 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC21.73■■□□□ 1.07
CCDC113Q9H0I3 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
CCDC113Q9H0I3 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CCDC113Q9H0I3 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
CCDC113Q9H0I3 TFP1-202ENST00000475455 1573 ntBASIC21.73■■□□□ 1.07
CCDC113Q9H0I3 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC21.73■■□□□ 1.07
CCDC113Q9H0I3 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CCDC113Q9H0I3 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
CCDC113Q9H0I3 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
CCDC113Q9H0I3 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC21.73■■□□□ 1.07
CCDC113Q9H0I3 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC21.72■■□□□ 1.07
CCDC113Q9H0I3 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CCDC113Q9H0I3 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CCDC113Q9H0I3 LINC01006-201ENST00000333319 2292 ntBASIC21.72■■□□□ 1.07
CCDC113Q9H0I3 NBPF21P-201ENST00000425093 1451 ntBASIC21.72■■□□□ 1.07
CCDC113Q9H0I3 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CCDC113Q9H0I3 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC21.72■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms