Protein–RNA interactions for Protein: Q9BYV2

TRIM54, Tripartite motif-containing protein 54, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54Q9BYV2 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
TRIM54Q9BYV2 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
TRIM54Q9BYV2 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM54Q9BYV2 BET1L-207ENST00000529614 560 ntTSL 5 BASIC19.4■□□□□ 0.7
TRIM54Q9BYV2 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC19.4■□□□□ 0.7
TRIM54Q9BYV2 AL138781.1-201ENST00000566567 1274 ntBASIC19.4■□□□□ 0.7
TRIM54Q9BYV2 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC19.4■□□□□ 0.7
TRIM54Q9BYV2 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM54Q9BYV2 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM54Q9BYV2 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC19.4■□□□□ 0.7
TRIM54Q9BYV2 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM54Q9BYV2 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM54Q9BYV2 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC19.4■□□□□ 0.7
TRIM54Q9BYV2 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC19.4■□□□□ 0.7
TRIM54Q9BYV2 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM54Q9BYV2 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM54Q9BYV2 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
TRIM54Q9BYV2 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
TRIM54Q9BYV2 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
TRIM54Q9BYV2 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM54Q9BYV2 PHGDH-210ENST00000641115 1638 ntBASIC19.4■□□□□ 0.7
TRIM54Q9BYV2 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
TRIM54Q9BYV2 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
TRIM54Q9BYV2 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
TRIM54Q9BYV2 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC19.39■□□□□ 0.7
TRIM54Q9BYV2 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM54Q9BYV2 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC19.39■□□□□ 0.69
TRIM54Q9BYV2 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM54Q9BYV2 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC19.39■□□□□ 0.69
TRIM54Q9BYV2 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM54Q9BYV2 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
TRIM54Q9BYV2 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC19.39■□□□□ 0.69
TRIM54Q9BYV2 AC133041.1-202ENST00000642053 222 ntBASIC19.39■□□□□ 0.69
TRIM54Q9BYV2 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM54Q9BYV2 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC19.39■□□□□ 0.69
TRIM54Q9BYV2 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM54Q9BYV2 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM54Q9BYV2 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM54Q9BYV2 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM54Q9BYV2 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC19.39■□□□□ 0.69
TRIM54Q9BYV2 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
TRIM54Q9BYV2 AC087289.5-201ENST00000586076 3175 ntBASIC19.38■□□□□ 0.69
TRIM54Q9BYV2 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM54Q9BYV2 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM54Q9BYV2 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM54Q9BYV2 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM54Q9BYV2 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM54Q9BYV2 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC19.38■□□□□ 0.69
TRIM54Q9BYV2 AC073210.2-201ENST00000430369 194 ntBASIC19.38■□□□□ 0.69
TRIM54Q9BYV2 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC19.38■□□□□ 0.69
TRIM54Q9BYV2 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
TRIM54Q9BYV2 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC19.38■□□□□ 0.69
TRIM54Q9BYV2 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC19.38■□□□□ 0.69
TRIM54Q9BYV2 AC005829.2-201ENST00000571422 1056 ntBASIC19.38■□□□□ 0.69
TRIM54Q9BYV2 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
TRIM54Q9BYV2 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM54Q9BYV2 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM54Q9BYV2 AC018445.3-201ENST00000624177 1945 ntBASIC19.38■□□□□ 0.69
TRIM54Q9BYV2 AC116562.4-201ENST00000641316 2276 ntBASIC19.38■□□□□ 0.69
TRIM54Q9BYV2 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM54Q9BYV2 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM54Q9BYV2 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC19.37■□□□□ 0.69
TRIM54Q9BYV2 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM54Q9BYV2 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM54Q9BYV2 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM54Q9BYV2 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
TRIM54Q9BYV2 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM54Q9BYV2 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM54Q9BYV2 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM54Q9BYV2 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
TRIM54Q9BYV2 RER1-204ENST00000378518 522 ntTSL 3 BASIC19.37■□□□□ 0.69
TRIM54Q9BYV2 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC19.37■□□□□ 0.69
TRIM54Q9BYV2 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM54Q9BYV2 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM54Q9BYV2 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM54Q9BYV2 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
TRIM54Q9BYV2 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
TRIM54Q9BYV2 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC19.37■□□□□ 0.69
TRIM54Q9BYV2 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM54Q9BYV2 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM54Q9BYV2 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM54Q9BYV2 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM54Q9BYV2 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC19.37■□□□□ 0.69
TRIM54Q9BYV2 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM54Q9BYV2 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM54Q9BYV2 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM54Q9BYV2 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM54Q9BYV2 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM54Q9BYV2 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM54Q9BYV2 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM54Q9BYV2 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM54Q9BYV2 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
TRIM54Q9BYV2 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC19.36■□□□□ 0.69
TRIM54Q9BYV2 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM54Q9BYV2 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
TRIM54Q9BYV2 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM54Q9BYV2 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM54Q9BYV2 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM54Q9BYV2 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM54Q9BYV2 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 58 ms