Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TIMP4Q99727 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TIMP4Q99727 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC18.05■□□□□ 0.48
TIMP4Q99727 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
TIMP4Q99727 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC18.05■□□□□ 0.48
TIMP4Q99727 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC18.05■□□□□ 0.48
TIMP4Q99727 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC18.05■□□□□ 0.48
TIMP4Q99727 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
TIMP4Q99727 SPIB-206ENST00000596074 847 ntTSL 2 BASIC18.05■□□□□ 0.48
TIMP4Q99727 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC18.05■□□□□ 0.48
TIMP4Q99727 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC18.05■□□□□ 0.48
TIMP4Q99727 AL023875.1-201ENST00000640777 796 ntBASIC18.05■□□□□ 0.48
TIMP4Q99727 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
TIMP4Q99727 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
TIMP4Q99727 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TIMP4Q99727 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
TIMP4Q99727 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
TIMP4Q99727 AC098818.2-201ENST00000564925 2320 ntBASIC18.05■□□□□ 0.48
TIMP4Q99727 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC18.05■□□□□ 0.48
TIMP4Q99727 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC18.05■□□□□ 0.48
TIMP4Q99727 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TIMP4Q99727 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
TIMP4Q99727 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TIMP4Q99727 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TIMP4Q99727 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC18.04■□□□□ 0.48
TIMP4Q99727 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TIMP4Q99727 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC18.04■□□□□ 0.48
TIMP4Q99727 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
TIMP4Q99727 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC18.04■□□□□ 0.48
TIMP4Q99727 PKD1P6-201ENST00000343738 4769 ntBASIC18.04■□□□□ 0.48
TIMP4Q99727 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC18.04■□□□□ 0.48
TIMP4Q99727 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
TIMP4Q99727 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
TIMP4Q99727 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TIMP4Q99727 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
TIMP4Q99727 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
TIMP4Q99727 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC18.04■□□□□ 0.48
TIMP4Q99727 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC18.04■□□□□ 0.48
TIMP4Q99727 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
TIMP4Q99727 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TIMP4Q99727 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
TIMP4Q99727 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
TIMP4Q99727 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC18.04■□□□□ 0.48
TIMP4Q99727 AC008550.1-201ENST00000511500 884 ntBASIC18.04■□□□□ 0.48
TIMP4Q99727 LY6E-205ENST00000519611 635 ntTSL 3 BASIC18.04■□□□□ 0.48
TIMP4Q99727 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC18.04■□□□□ 0.48
TIMP4Q99727 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
TIMP4Q99727 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
TIMP4Q99727 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TIMP4Q99727 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC18.04■□□□□ 0.48
TIMP4Q99727 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
TIMP4Q99727 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TIMP4Q99727 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TIMP4Q99727 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TIMP4Q99727 AC018445.3-201ENST00000624177 1945 ntBASIC18.04■□□□□ 0.48
TIMP4Q99727 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TIMP4Q99727 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC18.03■□□□□ 0.48
TIMP4Q99727 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC18.03■□□□□ 0.48
TIMP4Q99727 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TIMP4Q99727 PTBP1P-201ENST00000554374 1601 ntBASIC18.03■□□□□ 0.48
TIMP4Q99727 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TIMP4Q99727 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC18.03■□□□□ 0.48
TIMP4Q99727 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
TIMP4Q99727 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC18.03■□□□□ 0.48
TIMP4Q99727 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
TIMP4Q99727 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC18.03■□□□□ 0.48
TIMP4Q99727 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC18.03■□□□□ 0.48
TIMP4Q99727 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
TIMP4Q99727 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
TIMP4Q99727 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC18.03■□□□□ 0.48
TIMP4Q99727 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
TIMP4Q99727 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
TIMP4Q99727 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TIMP4Q99727 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC18.02■□□□□ 0.48
TIMP4Q99727 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC18.02■□□□□ 0.48
TIMP4Q99727 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
TIMP4Q99727 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TIMP4Q99727 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC18.02■□□□□ 0.48
TIMP4Q99727 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC18.02■□□□□ 0.48
TIMP4Q99727 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TIMP4Q99727 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TIMP4Q99727 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
TIMP4Q99727 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
TIMP4Q99727 HLA-G-202ENST00000376815 851 ntBASIC18.02■□□□□ 0.48
TIMP4Q99727 HLA-G-203ENST00000376818 1127 ntBASIC18.02■□□□□ 0.48
TIMP4Q99727 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC18.02■□□□□ 0.48
TIMP4Q99727 AC133681.1-201ENST00000465482 601 ntBASIC18.02■□□□□ 0.48
TIMP4Q99727 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC18.02■□□□□ 0.48
TIMP4Q99727 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC18.02■□□□□ 0.48
TIMP4Q99727 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC18.02■□□□□ 0.48
TIMP4Q99727 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC18.02■□□□□ 0.48
TIMP4Q99727 AC124016.1-201ENST00000609552 612 ntBASIC18.02■□□□□ 0.48
TIMP4Q99727 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TIMP4Q99727 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC18.02■□□□□ 0.47
TIMP4Q99727 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC18.02■□□□□ 0.47
TIMP4Q99727 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
TIMP4Q99727 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
TIMP4Q99727 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC18.02■□□□□ 0.47
TIMP4Q99727 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
TIMP4Q99727 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC18.02■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms