Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 AC116351.2-201ENST00000606540 1585 ntBASIC23.37■■□□□ 1.33
NKX2-3Q8TAU0 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
NKX2-3Q8TAU0 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
NKX2-3Q8TAU0 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
NKX2-3Q8TAU0 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
NKX2-3Q8TAU0 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC23.37■■□□□ 1.33
NKX2-3Q8TAU0 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC23.37■■□□□ 1.33
NKX2-3Q8TAU0 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC23.37■■□□□ 1.33
NKX2-3Q8TAU0 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC23.37■■□□□ 1.33
NKX2-3Q8TAU0 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC23.37■■□□□ 1.33
NKX2-3Q8TAU0 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC23.37■■□□□ 1.33
NKX2-3Q8TAU0 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC23.37■■□□□ 1.33
NKX2-3Q8TAU0 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
NKX2-3Q8TAU0 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
NKX2-3Q8TAU0 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC23.36■■□□□ 1.33
NKX2-3Q8TAU0 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC23.36■■□□□ 1.33
NKX2-3Q8TAU0 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC23.36■■□□□ 1.33
NKX2-3Q8TAU0 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
NKX2-3Q8TAU0 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
NKX2-3Q8TAU0 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC23.36■■□□□ 1.33
NKX2-3Q8TAU0 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
NKX2-3Q8TAU0 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC23.36■■□□□ 1.33
NKX2-3Q8TAU0 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC23.36■■□□□ 1.33
NKX2-3Q8TAU0 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
NKX2-3Q8TAU0 AC092865.7-201ENST00000641832 219 ntBASIC23.36■■□□□ 1.33
NKX2-3Q8TAU0 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
NKX2-3Q8TAU0 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
NKX2-3Q8TAU0 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
NKX2-3Q8TAU0 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC23.36■■□□□ 1.33
NKX2-3Q8TAU0 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC23.36■■□□□ 1.33
NKX2-3Q8TAU0 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC23.36■■□□□ 1.33
NKX2-3Q8TAU0 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
NKX2-3Q8TAU0 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC23.35■■□□□ 1.33
NKX2-3Q8TAU0 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
NKX2-3Q8TAU0 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
NKX2-3Q8TAU0 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC23.35■■□□□ 1.33
NKX2-3Q8TAU0 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC23.35■■□□□ 1.33
NKX2-3Q8TAU0 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC23.35■■□□□ 1.33
NKX2-3Q8TAU0 PHGDH-210ENST00000641115 1638 ntBASIC23.35■■□□□ 1.33
NKX2-3Q8TAU0 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
NKX2-3Q8TAU0 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
NKX2-3Q8TAU0 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
NKX2-3Q8TAU0 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC23.35■■□□□ 1.33
NKX2-3Q8TAU0 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC23.35■■□□□ 1.33
NKX2-3Q8TAU0 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
NKX2-3Q8TAU0 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC23.35■■□□□ 1.33
NKX2-3Q8TAU0 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC23.35■■□□□ 1.33
NKX2-3Q8TAU0 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC23.35■■□□□ 1.33
NKX2-3Q8TAU0 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
NKX2-3Q8TAU0 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC23.35■■□□□ 1.33
NKX2-3Q8TAU0 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC23.35■■□□□ 1.33
NKX2-3Q8TAU0 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC23.35■■□□□ 1.33
NKX2-3Q8TAU0 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
NKX2-3Q8TAU0 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
NKX2-3Q8TAU0 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
NKX2-3Q8TAU0 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC23.34■■□□□ 1.33
NKX2-3Q8TAU0 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC23.34■■□□□ 1.33
NKX2-3Q8TAU0 KRT16P6-202ENST00000425692 1426 ntBASIC23.34■■□□□ 1.33
NKX2-3Q8TAU0 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC23.34■■□□□ 1.33
NKX2-3Q8TAU0 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC23.34■■□□□ 1.33
NKX2-3Q8TAU0 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC23.34■■□□□ 1.33
NKX2-3Q8TAU0 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC23.34■■□□□ 1.33
NKX2-3Q8TAU0 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC23.34■■□□□ 1.33
NKX2-3Q8TAU0 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC23.34■■□□□ 1.33
NKX2-3Q8TAU0 PENK-204ENST00000518770 863 ntTSL 2 BASIC23.34■■□□□ 1.33
NKX2-3Q8TAU0 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC23.34■■□□□ 1.33
NKX2-3Q8TAU0 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC23.34■■□□□ 1.33
NKX2-3Q8TAU0 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC23.34■■□□□ 1.33
NKX2-3Q8TAU0 AL121829.2-201ENST00000620908 328 ntBASIC23.34■■□□□ 1.33
NKX2-3Q8TAU0 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
NKX2-3Q8TAU0 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
NKX2-3Q8TAU0 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC23.34■■□□□ 1.33
NKX2-3Q8TAU0 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
NKX2-3Q8TAU0 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC23.34■■□□□ 1.33
NKX2-3Q8TAU0 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
NKX2-3Q8TAU0 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC23.33■■□□□ 1.33
NKX2-3Q8TAU0 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC23.33■■□□□ 1.33
NKX2-3Q8TAU0 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
NKX2-3Q8TAU0 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
NKX2-3Q8TAU0 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC23.33■■□□□ 1.33
NKX2-3Q8TAU0 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC23.33■■□□□ 1.33
NKX2-3Q8TAU0 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
NKX2-3Q8TAU0 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC23.33■■□□□ 1.33
NKX2-3Q8TAU0 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC23.33■■□□□ 1.33
NKX2-3Q8TAU0 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.33
NKX2-3Q8TAU0 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
NKX2-3Q8TAU0 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
NKX2-3Q8TAU0 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC23.33■■□□□ 1.32
NKX2-3Q8TAU0 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC23.33■■□□□ 1.32
NKX2-3Q8TAU0 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC23.33■■□□□ 1.32
NKX2-3Q8TAU0 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC23.33■■□□□ 1.32
NKX2-3Q8TAU0 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC23.32■■□□□ 1.32
NKX2-3Q8TAU0 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC23.32■■□□□ 1.32
NKX2-3Q8TAU0 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC23.32■■□□□ 1.32
NKX2-3Q8TAU0 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC23.32■■□□□ 1.32
NKX2-3Q8TAU0 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
NKX2-3Q8TAU0 MMP23A-201ENST00000234610 1017 ntBASIC23.32■■□□□ 1.32
NKX2-3Q8TAU0 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC23.32■■□□□ 1.32
NKX2-3Q8TAU0 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
NKX2-3Q8TAU0 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC23.32■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms