Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VRK3Q8IV63 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
VRK3Q8IV63 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VRK3Q8IV63 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
VRK3Q8IV63 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC19.25■□□□□ 0.67
VRK3Q8IV63 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
VRK3Q8IV63 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
VRK3Q8IV63 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VRK3Q8IV63 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VRK3Q8IV63 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VRK3Q8IV63 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
VRK3Q8IV63 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
VRK3Q8IV63 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC19.25■□□□□ 0.67
VRK3Q8IV63 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VRK3Q8IV63 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VRK3Q8IV63 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
VRK3Q8IV63 ABHD17AP1-201ENST00000358206 933 ntBASIC19.25■□□□□ 0.67
VRK3Q8IV63 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VRK3Q8IV63 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
VRK3Q8IV63 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC19.25■□□□□ 0.67
VRK3Q8IV63 AL023875.1-201ENST00000640777 796 ntBASIC19.25■□□□□ 0.67
VRK3Q8IV63 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC19.25■□□□□ 0.67
VRK3Q8IV63 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VRK3Q8IV63 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VRK3Q8IV63 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
VRK3Q8IV63 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC19.24■□□□□ 0.67
VRK3Q8IV63 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC19.24■□□□□ 0.67
VRK3Q8IV63 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VRK3Q8IV63 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
VRK3Q8IV63 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC19.24■□□□□ 0.67
VRK3Q8IV63 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC19.24■□□□□ 0.67
VRK3Q8IV63 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VRK3Q8IV63 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VRK3Q8IV63 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC19.24■□□□□ 0.67
VRK3Q8IV63 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC19.24■□□□□ 0.67
VRK3Q8IV63 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VRK3Q8IV63 RN7SL471P-201ENST00000580476 299 ntBASIC19.24■□□□□ 0.67
VRK3Q8IV63 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC19.24■□□□□ 0.67
VRK3Q8IV63 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VRK3Q8IV63 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
VRK3Q8IV63 AP006587.1-201ENST00000534129 1502 ntBASIC19.24■□□□□ 0.67
VRK3Q8IV63 GOLGA6L3-201ENST00000507199 1679 ntBASIC19.24■□□□□ 0.67
VRK3Q8IV63 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
VRK3Q8IV63 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
VRK3Q8IV63 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
VRK3Q8IV63 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
VRK3Q8IV63 TREX2-204ENST00000370212 861 ntTSL 5 BASIC19.23■□□□□ 0.67
VRK3Q8IV63 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
VRK3Q8IV63 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
VRK3Q8IV63 F2R-202ENST00000505600 442 ntTSL 2 BASIC19.23■□□□□ 0.67
VRK3Q8IV63 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
VRK3Q8IV63 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
VRK3Q8IV63 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VRK3Q8IV63 ITM2C-210ENST00000620962 501 ntBASIC19.23■□□□□ 0.67
VRK3Q8IV63 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
VRK3Q8IV63 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC19.23■□□□□ 0.67
VRK3Q8IV63 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC19.23■□□□□ 0.67
VRK3Q8IV63 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
VRK3Q8IV63 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
VRK3Q8IV63 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
VRK3Q8IV63 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC19.22■□□□□ 0.67
VRK3Q8IV63 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VRK3Q8IV63 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC19.22■□□□□ 0.67
VRK3Q8IV63 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC19.22■□□□□ 0.67
VRK3Q8IV63 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
VRK3Q8IV63 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC19.22■□□□□ 0.67
VRK3Q8IV63 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
VRK3Q8IV63 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VRK3Q8IV63 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
VRK3Q8IV63 SERF2-207ENST00000409614 582 ntTSL 2 BASIC19.22■□□□□ 0.67
VRK3Q8IV63 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC19.22■□□□□ 0.67
VRK3Q8IV63 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC19.22■□□□□ 0.67
VRK3Q8IV63 MMD2-204ENST00000612910 778 ntTSL 5 BASIC19.22■□□□□ 0.67
VRK3Q8IV63 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VRK3Q8IV63 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VRK3Q8IV63 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VRK3Q8IV63 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VRK3Q8IV63 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
VRK3Q8IV63 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VRK3Q8IV63 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC19.22■□□□□ 0.67
VRK3Q8IV63 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VRK3Q8IV63 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
VRK3Q8IV63 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC19.21■□□□□ 0.67
VRK3Q8IV63 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
VRK3Q8IV63 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
VRK3Q8IV63 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VRK3Q8IV63 PRORSD1P-201ENST00000295112 541 ntBASIC19.21■□□□□ 0.67
VRK3Q8IV63 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
VRK3Q8IV63 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VRK3Q8IV63 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VRK3Q8IV63 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC19.21■□□□□ 0.67
VRK3Q8IV63 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC19.21■□□□□ 0.67
VRK3Q8IV63 LY6E-205ENST00000519611 635 ntTSL 3 BASIC19.21■□□□□ 0.67
VRK3Q8IV63 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC19.21■□□□□ 0.67
VRK3Q8IV63 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC19.21■□□□□ 0.67
VRK3Q8IV63 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC19.21■□□□□ 0.67
VRK3Q8IV63 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
VRK3Q8IV63 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
VRK3Q8IV63 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
VRK3Q8IV63 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms